BtaEX6053947 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002278 | FBN1
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:61913807-61931167:+
Coord C1 exon
chr10:61913807-61913905
Coord A exon
chr10:61926315-61926410
Coord C2 exon
chr10:61931072-61931167
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTCTTTTCAAGTCC
3' ss Score
9.4
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CCATTTGCCGGCATTCCTGTGGGGATGGATTTTGTTCGAGGCCAAATATGTGCACTTGCCCATCTGGTCAGATAGCTCCTTCCTGTGGCTCCAGATCCA
Seq A exon
TCCAACATTGTAACATTCGCTGCATGAATGGAGGTAGCTGCAGTGATGATCATTGTCTGTGCCAGAAAGGATACATAGGGACTCACTGTGGACAAC
Seq C2 exon
CCGTCTGTGAAAGTGGCTGTCTTAACGGAGGCAGGTGCGTGGCCCCGAATCGATGTGCGTGCACTTACGGCTTTACTGGACCCCAGTGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278-'2-3,'2-2,8-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCCTGTGGGGATGGATT
R:
TGGGGTCCAGTAAAGCCGTAA
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]