MmuEX6104587 @ mm10
Exon Skipping
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125466603-125477595:-
Coord C1 exon
chr2:125477497-125477595
Coord A exon
chr2:125468543-125468638
Coord C2 exon
chr2:125466603-125466698
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTTTTTATCCCTAGTCC
3' ss Score
10.28
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCATTTGCCGGCATTCCTGTGGGGATGGATTCTGCTCGAGGCCAAATATGTGCACTTGCCCGTCTGGTCAGATATCTCCTTCCTGTGGCTCCAGATCCA
Seq A exon
TCCAACACTGCAGCATCCGCTGTATGAATGGGGGCAGCTGCAGCGATGACCACTGTCTGTGCCAGAAAGGGTACATCGGCACTCACTGTGGACAGC
Seq C2 exon
CTGTCTGTGAAAGTGGCTGTCTCAACGGAGGGAGGTGTGTGGCCCCAAATCGGTGTGCTTGCACGTACGGCTTTACTGGACCCCAGTGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204-'10-6,'10-5,12-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCCTGTGGGGATGGATT
R:
GGTCCAGTAAAGCCGTACGTG
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types