RnoEX6018851 @ rn6
Exon Skipping
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117726599-117737300:-
Coord C1 exon
chr3:117737202-117737300
Coord A exon
chr3:117728509-117728604
Coord C2 exon
chr3:117726599-117726694
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTTCTTATTCCTAGTAC
3' ss Score
7.5
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CCATTTGCCGGCATTCCTGTGGGGACGGATTCTGCTCAAGACCAAACATGTGCACTTGCCCATCTGGTCAGATATCGCCTTCCTGTGGCTCCAGATCCA
Seq A exon
TACAACACTGTAGCATCCGCTGTATGAATGGGGGCAGCTGCAGCGATGACCACTGTCTGTGCCAGAAGGGGTACATTGGCACTCACTGCGGACAAC
Seq C2 exon
CTGTCTGTGAAAGTGGCTGTCTCAATGGAGGGAGGTGCGTGGCCCCAAATCGGTGTGCATGCACATACGGCTTTACGGGACCCCAGTGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTGTGGGGACGGATTCT
R:
GGTCCCGTAAAGCCGTATGTG
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]