DreEX0032243 @ danRer10
Exon Skipping
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16499329-16506370:-
Coord C1 exon
chr10:16506272-16506370
Coord A exon
chr10:16501453-16501548
Coord C2 exon
chr10:16499329-16499424
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTTACTCTCTAAAGCCA
3' ss Score
5.13
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CTATTTGCCGGAGTGACTGTGGGGATGGTTTCTGCTCCAGACCTAACATGTGCACATGTCCTGGTGGACAAACAGCTACAACCTGTTTTACTAAATCAT
Seq A exon
CCAAACAATGCAATATAAGGTGTATGAATGGAGGAGTGTGTGAAGATGACTATTGCCAGTGTCCAAAGGGATATACAGGAAGCTTTTGTGGACAAC
Seq C2 exon
CTGTCTGTGAAAAAAACTGTCAGAATGGTGGACACTGCATTGGACCGAACAGATGCGCGTGTGGATACGGCTTCACTGGACCACAGTGTGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=78.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGGGATGGTTTCTGCTC
R:
GTGGTCCAGTGAAGCCGTATC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]