HsaEX0025080 @ hg19
Exon Skipping
Gene
ENSG00000138829 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:3604]
Coordinates
chr5:127854966-127872177:-
Coord C1 exon
chr5:127872095-127872177
Coord A exon
chr5:127863565-127863660
Coord C2 exon
chr5:127854966-127855061
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTGTTATTGCTCTTTGCAGTTC
3' ss Score
8.2
5' ss Seq
AACGTAAGG
5' ss Score
7.34
Exon sequences
Seq C1 exon
GCCCAACGTGTGCGGCTCCAGATTCCACTCCTACTGCTGCCCTGGATGGAAGACGCTCCCTGGAGGAAACCAGTGCATTGTCC
Seq A exon
TTCAGCAGTGCAGTGTGAGATGCATGAATGGTGGGACCTGTGCAGATGACCACTGCCAGTGCCAGAAAGGATATATTGGAACTTATTGTGGACAAC
Seq C2 exon
CTGTCTGTGAAAATGGATGTCAGAATGGTGGACGTTGCATCGGACCCAACCGCTGTGCTTGTGTTTATGGGTTCACTGGTCCACAGTGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138829_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTCCAGATTCCACTCCTA
R:
CTCTTTCACACTGTGGACCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)