GgaEX6050672 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56742153-56745085:-
Coord C1 exon
chrZ:56744987-56745085
Coord A exon
chrZ:56744313-56744408
Coord C2 exon
chrZ:56742153-56742248
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCCTGGCCCCTGCAGCTC
3' ss Score
9.42
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
CGATCTGTAGAAATAGCTGTGGTGATGGATTTTGCTCTCGCCCTAACATGTGCACTTGTGCAAGCGGACAAATATCACCTACTTGTGGACCAAAATCTA
Seq A exon
CTCAGCAGTGCAGCATCAGGTGCATGAACGGTGGTACCTGCGCTGACGACCGGTGCCAGTGCCAGAAGGGCTACATCGGGGTCTACTGTGGACAGC
Seq C2 exon
CTGTCTGTGAAAAAGGCTGCCAGAATGGAGGACGGTGTATTGGACCTAATCGCTGTGCATGTGTCTACGGGTTTACTGGTCCTCAGTGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGGTGATGGATTTTGCT
R:
AGGACCAGTAAACCCGTAGACA
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]