MmuEX6001685 @ mm10
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58190241-58203844:-
Coord C1 exon
chr18:58203746-58203844
Coord A exon
chr18:58200610-58200705
Coord C2 exon
chr18:58190241-58190336
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGCTGTTCTTCACAGTTC
3' ss Score
9.3
5' ss Seq
AACGTAAGA
5' ss Score
7.69
Exon sequences
Seq C1 exon
CCATTTGCAGGAACAGTTGTGGAGATGGATTCTGTTCCCGCCCCAACATGTGTACTTGTTCCAGTGGACAAATATCCCCGACATGCGGAGCCAAATCAA
Seq A exon
TTCAGCAGTGTAGCGTGAGGTGCATGAACGGCGGGACCTGTGCAGACGACCACTGTCAGTGCCAGAAGGGATACATCGGAACTTACTGTGGACAAC
Seq C2 exon
CTGTCTGTGAGAATGGATGCCAGAACGGGGGGCGTTGTATCGGCCCTAACCGCTGTGCTTGCGTTTATGGATTCACCGGGCCGCAGTGCGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGAACAGTTGTGGAGATG
R:
CCCGGTGAATCCATAAACGCA
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types