BtaEX0014236 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18072734-18073450:-
Coord C1 exon
chr7:18073352-18073450
Coord A exon
chr7:18073073-18073168
Coord C2 exon
chr7:18072734-18072829
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCCCTGCTCCCTGCTCACAGGGT
3' ss Score
10.32
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CCATCTGTAGGCACGCCTGTGGCCAGGGCTTCTGTTCCCGACCCAACCTCTGTGCCTGCGCTGATGGGAAGCTGGCCCCCAGCTGCGGGGTGAGCCGAG
Seq A exon
GGTCAGGGTGCAGTGTGAGCTGTATGAATGGGGGCAGCTGTCGAGGGGAGTCTTGTCTGTGCCAGAGGGGCTACACAGGCACCGTGTGTGGGCAAC
Seq C2 exon
CTGTCTGTGACCACGGCTGCCACAACGGGGGCCGCTGCATTGGGCCAAACCACTGTGCCTGTGTGTACGGCTTCATGGGGCCTCAGTGTGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'4-8,'4-7,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGTTCCCGACCCAACCT
R:
CTCTCTCACACTGAGGCCCC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development