BtaINT0061208 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18072734-18073168:-
Coord C1 exon
chr7:18073073-18073168
Coord A exon
chr7:18072830-18073072
Coord C2 exon
chr7:18072734-18072829
Length
243 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
CCCCTTCCCTTCCTCCACAGCTG
3' ss Score
12.48
Exon sequences
Seq C1 exon
GGTCAGGGTGCAGTGTGAGCTGTATGAATGGGGGCAGCTGTCGAGGGGAGTCTTGTCTGTGCCAGAGGGGCTACACAGGCACCGTGTGTGGGCAAC
Seq A exon
GTAAGTACCCCCCATGCACACCTGGGCTTGGGACCCCGGAGGCCAGGTCTCTGCTATCGTCTGCCTACTGCCCACCGGTCCCTCTTCTGGGACCAGGATTGGAGGGGACACACTCATTGTTACAATCTTATCCCTCGGTCTGGGCTGGGTTGCGGGGATTCCTGTGTGAAGAAATGCTCACTCGGGCCTCAGCTCCCTCTACTGTTGGGGAACCTCAGGCCACCCCCTTCCCTTCCTCCACAG
Seq C2 exon
CTGTCTGTGACCACGGCTGCCACAACGGGGGCCGCTGCATTGGGCCAAACCACTGTGCCTGTGTGTACGGCTTCATGGGGCCTCAGTGTGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTGCAGTGTGAGCTGTAT
R:
CTCTCTCACACTGAGGCCCC
Band lengths:
188-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]