DreINT0067442 @ danRer10
Intron Retention
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16499329-16501548:-
Coord C1 exon
chr10:16501453-16501548
Coord A exon
chr10:16499425-16501452
Coord C2 exon
chr10:16499329-16499424
Length
2028 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TGCAGGTGGTTTTGTTTCAGCTG
3' ss Score
5.91
Exon sequences
Seq C1 exon
CCAAACAATGCAATATAAGGTGTATGAATGGAGGAGTGTGTGAAGATGACTATTGCCAGTGTCCAAAGGGATATACAGGAAGCTTTTGTGGACAAC
Seq A exon
GTAAGTATATGGCTTCTGCTTACATCCTTACTGTAAATTGTGTTGGTGACCTCTGCCTGTGTTTATTCCTCTCATGTTGTCACTTATTGCCCACTAATGCTAAAAAATATAAGTAAATAAAGAAATAAAGAAAAAAATACATCCAGTATCATTTGTCCTACAGTATAACGTCTGCAGATCTCCTGATACATGGCCTACAAGTTTGTAATGCTTCCATTGCTGCTTGTTTTGGGCCTAGATGTGAAATTATGTTAAACTCTTGGTATTCTTCACATGATACCTGCTGTTTTAGTGTTTATTTGTTACTTAGCATCTACAGAGTATTGTGCTTTCGATTGCAATTCCAAGTATTTTTGGAACTCAGCTACCTAGCTAACATGAAAACAACTGTCATATTTCCTAGTCTCTCTTAAAGGCCCGCCCTCAAGATGCTCTGATTGGTCAGCTAACATAAAGTGCTGGAATTCGTGGATTGGCTCCACATTATCACGTCACGCTCCTACAAGCGCACACTTTTGGGCTGTGTAAATACTGTCAGTTATAGCAGCTAGCAGCATTAGCTGCTTTTAATCAGACAGAAAAATTAAGAGCACACAATAATATAACTAAAATATAACTCATGTAAGTAAATAAAATTAGGCTATGGTACAATTCTAGGGACTAAGGAGTTCAGTGTGCAGGGGGGAGGAGCTGAACACACAGCGTCAACCGGCACCTGGACTCTGAGGTCTGTGGGATTGGGGATGAGCAATAACAGAATCTGGTTGCACAACTAACACAGTAGGTGGCGATATGTACAAAGAATGCAGTTCGCCAGAAAACTAAGAAGAAGAAGAAGAAGAGCACACAGTCAAACTTTACGCATAGTCTTTTTGAAAAATTCTACACATATATAGGGAATAAGCATGTGTAGTGATATGAAATCTTTAGTAAGTTGGTTAGTTGTATTTTTTTTGTAGTCCCCAAACTTTGTTCACCGTAGGCTTTGCTAAAACTAACTTTGTAAAAATCAATGTCCCCCTTTTCATTGAACTTTGGGAATATTACATTCAGAGATGTTGTTTATGTTCACACAGCTACATTATATATCACCTAAAAGTGAAAATCTGATATCGTAGTGGACCACCTCTTTAAAACAATTATGTGAAAAACTGATTTGTTCACTAAAGCAACATAGTCATATTCTGAAAGATCTTTAAGTTTTTCATAAACTGTAATCATACCAGACCTCTGGAGGCTTTCATGGGTTTTTAGGATTGCAGCAGATGTAAATCATGCCGAGAACCAGTCGTTTCTATAGAAGTTCAAGGGTTTGCTTATAGACAATAGAAGGCAGGCCAAAGCTCTTGGCTCATCTGTTTGGCACTAAGTTGGTATTAAAAGTTTCTTTGATTTTGGTTCTAAAGCCATGGCCTTCTGCCAGTGCTTTGAAATGCAAGATTACAGCAACAACACGTAATGTATTGACATTTGCCTGTTTTTTAAGTCTGCCATAATTGATAAACCTACATTTTCAAATTAAATTCAAATTTAAACTATCATTAAAATGATTTATTATATATGACTAATATGTCTTAAATCCCTGATCTAACGTGATTTAGCCCACAAAACTAGTTATAAGTGGGGTGAGGTCTATGCATTTTCTGAAAGTCAATTAAATATACTTTCTATTGATGTATACTTTGTTAGGATAGGACAAAATTATCTGGAATCAGGGGGTTTTATATATTAAAATACTGAGTAAATCTTGTTTACAGATATTTAAATTAGGGCTTCTTATCCACGTTAAGCTATTATCCATGTATATTATCAATCAAAAATAGAGTATTTAAATATTTACAGTGGGAAATTTACAAAATACCTTAATGGTACGCAATCTTCACTAAACAAATCACAATGTTTTACTTGTATAATTAATTTTTGGCTAAAATTTTACCGGTGCAACAAAAGACCAGTTTTGTGGATCAGGGTCACATATATACAACACAAGAATACAGTAATGTTTTAATGCAGGTGGTTTTGTTTCAG
Seq C2 exon
CTGTCTGTGAAAAAAACTGTCAGAATGGTGGACACTGCATTGGACCGAACAGATGCGCGTGTGGATACGGCTTCACTGGACCACAGTGTGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896:ENSDART00000149104:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=78.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]