GgaINT0062388 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55832326-55834581:-
Coord C1 exon
chrZ:55834486-55834581
Coord A exon
chrZ:55832422-55834485
Coord C2 exon
chrZ:55832326-55832421
Length
2064 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
TTTCTTTTTGTTAATTAAAGCTG
3' ss Score
6.67
Exon sequences
Seq C1 exon
CTCAGCAGTGCAGCATCAGGTGCATGAACGGTGGTACCTGCGCTGACGACCGGTGCCAGTGCCAGAAGGGCTACATCGGGGTCTACTGTGGACAGC
Seq A exon
GTAAGTAGCCATCCTGGTGTGTCTGTGGTTCAGCCCTACGGGCCAGACGTCCTCCTGCAGGCAGGATATGATGATAGAAAGCAGCCTCTTAGCAAACCCAGAGCAGAATATCAGTGAGCAGAGTGATGCTGTTGTGGGGGACAGCATGTAGCTGGAGGTCAGTTCGTGCGTGAAGTGCACTTGTAGTCTCTGAAATTCAGACTAGGGATTGAATTCCCCAAGTAGTTTTGACTGGAAAAATCCTTTGGAAGTGGTGACAGTATGCATCCCACTTGCCTATTTTTTGTTTTTGTTTTCAAGCCATGTGGTCAATAATTTTTCATTCTCTTTGAAGAAGTGTCTCAGAAGAGGTGCTTAGCTGATATGTTACAGCAAGTTTTTCTGTTTTGTCTTTGACGAAGGAAAAAGATTAAATATAGTTCGAGCTCTTGGGTGTTTTTCTAGTTGGCAGACAAAGCAGACAGTCAATTATTTGCGCATCTTATTTCTACCTATCATAGGACCGTATTGACAGGCTATACAGATTTAGCAAACAATGAGAATTACTGAGACTGCAGGCATTTTAAGGATTCAAAGAGGTAAGGTGTTCTGAGGCTAGGTGTTGAGTTACTAGCTGAGGAGTTAGCTGCTGGAGGTCTGAAGGAAATAGAAACAAATAAAAGCCACTGTGCAAAGAATGGTCAGACTGGGTAGCATGGAAGAACATCATTTTGTCTTGCTGTTTTGACTTTGTGCTTTAAAGCAGACTTTTTTCTTTCTTCTTTTTTTTTCTTTCTTTTTTTTTCTTTCCCTTTAATTCTGCTTGGGTAAGCTCTCTAAAAACTTAAGGTAATAGTTGTAATAATACAATGTAACCCTTGCTCACTGACAAATTTACTTCCAAGTGTTGGTGGCCCCATCCTGCACATCTTGAAGTCTTGAGCCAAATGTGTACACTTTCCGACAGGGCATGTTTAGAGTAAATAAATGAAAAGATGTTTCTAAAGCAGTCCATAAAGCCTGAACTTACTGTTGAGACTGGCCTCAGTGAATATCTTGTTATGTTCCCCACTGTGATAAAGAGCATTTTTCTGTTTTGAAAGGTTTACTATCTCTACATTCCTGAGGTCCCTTTGCACTGGATGCTCAAATACGTTATAAACCCTGGCCTAACTTCTAGACTGGGACCTGTTTGCTGCTGTTCGCATGACTTAAAGACAGTGGGACTGTCTTTTAGGTGAAATTTGTTGGCTTGGATTGTATGCTAACTTTGAACAAGGCTGTATGACCTGGAAGCGGTGACCTGGATAATAGGCAGAATTGATCAAAAAACTTTAATGGTATTATTTGAACTCATTGATGAACTGCCTCTCTTTCAAACTGGAAAGACTTCATTTCTTCAGAGAGAGGCTTTGTTCATGCTTCTCCCCACTGATAAATAGTGTGAGTGAGTGTGCAGATGTTCCATAACTGCAGGAGTACCTTTTCCTTCTTTCCATACTACGCCTTCTTACCAAGAAAGAAAAAAAAAGTTGTATTTCTTTTAGGGATCCTTTTGGAAACATGGTTTCTGATTGAGCTTAAAGATAAATTAAACTGGTAATTCATTTCCTTTGCTCCAAGCTTCCCTTCTTCTGCCAGCATTATGAATCTTGAGTGCTGTGTTATCTGTCTCCCTGAATCCCCAGGCCCTGCTTCCTGAGAGGTCTGTTGCTGCTGGAAGTGAATATCACAGCTAAACCTGTGCACAAATTATTTGAGTTTGTACCTGCTAACTTTGGTGATGGATGTAAGTTCTTATGATTAGAGACCTGCGGCACAACTGTTTAAATTATGTACTGAAGTTAAGTGTCTGCCAAAAAGTTGTGCTGAATAAGATTAATTAAACAGCTGCTTGTAAATAAGGCGGAGAAGATGTAGTACTAATGGAATTTGACCTGAACAATCATTATTATTAGCGTTTGATCTTTGGATCCAGAGAGACTTACAGTAGTTGAGGGGAAAAAAAATGATTTTTGAATAACATGGATGCAAATCTAAGATGTTGTTAACATATTTTTTTTTCTTTCTTTTTGTTAATTAAAG
Seq C2 exon
CTGTCTGTGAAAAAGGCTGCCAGAATGGAGGACGGTGTATTGGACCTAATCGCTGTGCATGTGTCTACGGGTTTACTGGTCCTCAGTGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]