MmuINT0062955 @ mm9
Intron Retention
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58349895-58360359:-
Coord C1 exon
chr18:58360264-58360359
Coord A exon
chr18:58349991-58360263
Coord C2 exon
chr18:58349895-58349990
Length
10273 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGA
5' ss Score
7.69
3' ss Seq
TTTTTTTAATGTGTCTGCAGCTG
3' ss Score
9.13
Exon sequences
Seq C1 exon
TTCAGCAGTGTAGCGTGAGGTGCATGAACGGCGGGACCTGTGCAGACGACCACTGTCAGTGCCAGAAGGGATACATCGGAACTTACTGTGGACAAC
Seq A exon
GTAAGACACCTCAGGAACAACTCTATTGTAAAACTGTGACTAAGTGCCCATGTCACATTGGTCAGAACTTAAGTTCTTACAAAGTTTATGGTTGGGCACTGGAAGAAGTCATTTTATATAATAAGTCATAGGTCACAATTAAGCCTGGAAGAATTCTTCTAACTCAGTAGGTTTTCTATGCTTTATAATTTTAATGTTGAGCACTAGTGATGTGCTATCAAGTTTGGTACTTATCATGGATATTTATGCCACAAAACATATACATGTTTCTGGGAAAAAAACAAAAAACAACAACTAAAGATACTGGAAATCTCTACAGCTCTCTTCCCAACCTCGTTTTAAGAATCATTCAAAACCCTACGAGAGTTAATTTCACGAATTGCCATTTGTTCAAATGCATTTAATAGCAGAATACAGGACTCTGGAATTATTTGAAGAGATAAGGTATAGCTATGAAAGAAGCGACTTTTAACAAGTTCGTAGCTACTCAGCCATACTGGAGATGGAGATTGCGGTCTCGTACATGCCAGGCAAGCACGTTACCACTGTGCTACATCCCTGCGCCAGTAAATGAAACTATCTTCACTGGAGAGAATCACACACTGATCAAGAAATAGTCCTGTTTGGAGGAAGGTGTAGATTGTAGCTCTAAGGATGGCACACATCCCTGGGGAACACAGTTGGCTAATGGTTGCCAAATCGGGATACTTTTCTGAGAGTTTGTACTGTTTTTGTTTGTTGGGTTAGTATCATTTGCTATGCTGAACCTGAATCTAAGTCTTCATGTATGATAGCAGGCTTTTTGTAGCTGAGATAGAGCCTAGATCCTCTTTTTACTTTATAATTTGAGAAAAGATCTCACTAAATTTTCCAGGCTGTCTTTAACCTCACCAGCTGGCCCAAGCTGGCCTAGAACTTATGATCCTCTATCCTCAGTCTGCTTAGTATCTGGGATGCATAGGACTGTATTACCCATCCCAGCTAAGACTAGCATAATTTTAAGTATATATGAAGAACATTATAAAAGGTTGAATCACATGTAGGAGGATCATCCATGTTACTTCATTCATAATTCATGTGAGCCTAGTCTCTCCACAGCTTCCCTATGAATTCCCAACCTATTTCCAGCATAGGGGAACTGATGTTAAGTGGGCATAATTATCTACTTTTAATTACACTATTGATTTTTTTGTTGCCATTTAAAATGTTTTTTGATTGTGGTAAACACCTCTAATATGGCACTTATCCCCTTCAACACTTTGAGTTACAGCTCAGAGGCACTGGTCCATACTCACTGCAGGGCAGGCATCACTACCCCATCTCCAGGATGTCTGTGCTGCCAAACTAGAGATCTACCCCTGTGAGATCACTGTCCTCATTTCCTTCTCACCCCAAGTCCTGGTACACACCATCCTTCTAGTCTCACACTTTTGATTGCCCTAGCTACTTTATGAAGTATAATAAGAAGGATGTATGAGCACAGCATTTGTCCTTTTATCACTAGGACTTAGCCAGATAAATTCCTGTTTTATTCAATTTATACCATGTATCAGAATTCCTTCCTCATAAAGGCTGCATTACTATGAGAAATTCATCCTGTCTGTCTGTCTGTCTGTCTATCTATCTATCTACCTATCTCTGTCTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCGTGTCTATGGGTCTCATTGTTTACACATCTGTTGATGAACTTTAAGTTCATTCGTCTCTTGGCTGTTGTGAGTGATTCTGTTGCAAACACCATTTTATAAAAACCTGTTTGAGTCCTGATTTCCATTCTTAGAATATCTACTGAGAAATGGAATCTCTATTTTCAGAGTGTTTGAGGAAATGCTATACTGTTTTCTGTTACAGCTGCAGGAGTTATTCCTGACACGAAGCAAAAGGGCCCAGGTTGCCTTGCTAACCCTGGGTGCTTTGTTTTTCTTTTTTAATGAAAACCACTCTCATAGGCATGAAGCAGTATTACACTGTGGTTGTTCTAGTTATTTTTTTAAATACTGTCTTCTAGGTGTAGTTGTCGCTTCCTGAACAATGCTACAAAGATGTTAGACAATCTGAAGAAAGGCAAACAGTCTATATTCTGCTAAAGGCAGGAATAGACCAACTCGAAGATTAGAAAATACATATTTTAGTGTCTACTTTTGTGTTGTTACAAAGACTGGACTCTGTGTAAAGATGGCCACAGGCTTGTGTTTTCTAAAGGAAAGTTAGGGGGACATAGGTAGATGGGAAAGCCAGACCCTTGTGATGGTGGCTTCTTGTTCCCAGAATACATTGCAAGCAGAACCTGCTTGGAGCCATTATCTAAACTGGACCAATAAGGGGAAAGGAAGGAACCAGGGGCCCTTCCTTAATCACCTTAGACATCCAGCCCAGAATCTGTTCAGCAGAACCCAGGCCTAGGGTTCCTCCCATCCAGAAGGGATGCTTTTGCTTTCAAAGGCAGCTCAGTGTTCTATCTTTCCTGGATATTCAATTCTTTGTCCACCCCCCAGGGAATGAGCAATTCCCCATTGATGATCAATGACACCCCATTACAATACATGGGAACTCTCACTCAAGGTTGCATACCTGCCCAAAATTCAGAGACTCAGAAGTGGCTGCTCTTTGAGGGCCTCTTCTGAGAGGGCAAAGCACCTACACACATAACTACAAAGGACGGAGCTGCCACTCAGTCATCACGAAGGCTAGCATTGGAGTAGACAGAGTAGGGGATTGGGTGCCTTTGTATCAAGGAGTTTTGATCTCTTATGGCTAGACAGATATTTCTCCCAGGAGATAGTAGAGGCTTCTGATGCTGCCCCTAAGCCAAGAGATAGGGCATGCCAAACCCCAAGGACCCAATTGTTGTCCAAAGAGGAAGGCTGGGGAGGACCTTTCACTCCATATGCTTGGGAAAGACCATGGAGAAGGTCACAGTGCTCAATGGCTTCTTACTTCATACACAGCTCTTAGGTCCCTCTGCTGTGAGTAACTCAAGGGTCAGCATCTGGTTGTAGGGGGATGGGAAGACTTGGTCGGTTCTATTTTGAACAATTGCAGTGTGTAGGCAAAACCTGAAGTAATTTTTAAGTTTCTGATGTCAAGTAAAAAGGTATTGCCCAGCTTGCTGTAAGTTGAGGTGGAGCATGCCTGAAATTCAAATCGAGGCTCTGAGTGAGCTAGGGGGAGTGTTCTGTCCTTGTGTAGTCAACGTTGTCTGAGGGATGACAGCTCTTTCAAATACCCCCCTGCATGCACACACCCCTTCTTCTGCCCAGGACCTCCCCCGCCACACCCATGTTGTATACACAAAGCTCTTTGCTGGCCTTGTAGAAAACCCTGGCTCCTGGAGATCCCCAAGCTGATGGAGGAGTCAGGAAAGAGAACAAAGAGGCACTGACTGTGGAGATGTGGGTGGGGTCCAGAGGCAGAAAGCTTGTCTAGACAGACAGGGTCCTCTGGTCCATCCCTAGCAACAGAGCAGTCAGTTATGGAAGAAAGACGTTGGAATTTAAGAGTTTTCCCCATCTGTGTGTTTCTATCACTAACATGGCCTGGTAAGTTCATGGGAATTGGCAGAAGCCCAGGTTCAGGTGCTAGACAAGCTATCATCTGTAGCAGCTTGGGGCAAAGAAGGAAAAGACTCCTTGGCTAGAGATGAGGACTCCACAGGCCTTAATACCTGGCCTTTCTGCCCGGAATCTTCAAGTCTCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCCCCCCTCTCTGTCTCGCGAGCGCGCATGTGCGCTCTCTCACGATCTCTCTCCTTAAGATAGAACATTCTTTCCCTCCTGTTTTTCTTGTCTCTTTCTGCTTGTTGTGGCATTAACAGTCAAAGGGGGAAAAAGCATCCTGGTGTTCTCTAGAGACAGGGCGCCTGCGGTAAATTGCTTGCCCTGAGTATTTTTCAATGGTATATCTTACCCAGGCTAGATAAGATTAAGGTTTTATTAAGGTCACAGGGTGCCAAAGAGTCATATCATATCAGCAAAGGCAAATGTGAACAGGCCCTGCCTTCTTCATGATCACTAATGAGGAAGGTGTCCATGCCCAGGTTGGTAATGAACTGTGTTCTCAGACAGGCACCTACTGTTCTCATGATCGCTCGGGATAAGAGGAGCAGGAGATGGTACATCTCTGGAGCAGGCTCTGGAGAAGGAGACCAAGGGGAACATCTGGAAGATGTTCTAACATACATCGTTTTGTCTTTTGTTATCCAGTGCTGACTGTTTTAGCATATCTAACCAGATGAAAGCTCTGGAGAGGGAGACCAAGGGGAACATCTGGAAGATGTTCTAACATACATCCTTTTGTCTTTTGTTATCCAGTGCTGACTGTTTAGCATATATAACCAGGTGAAAGTCACAGGTACTTCTCCTAATTCAACTTTCTGTTCTGAAAGGGAGAGCGTGACGTCTTCTTTAGAACCATTGAGCAGAGCAGAGCATCAAAGTGATTGTTTAGAGCACTTCTTAGGACTGTCTTTGCCCTGTTTGCAGCCTGAATTCAGTACCCAGGTATACTTGGGGTGTCTAGAACAATCAGAGGGTGTCTTGTCTGTTTCTAACCCACAAAGGAGCAGCTATGGAGTGAAAAGCCCCTCCCTGGTAGAAGAGTATTCTGAGCCTCGCCCAGCCCACTGTCAACCTTACTGATGCTATGCTGTCTAGTTGGAGGAATCCATTAGGTACTGAGTTGCCAGCCAGGATACATGCAAACAGCTCTTTCCTGAGTCTCATAGGATGGATCCTTCTGTCTGCCTTTGTCACAGGGACAATAGAACCTATGGTACAAGCAATGCCTTAGCCTATAAATCCAGTAGTTAGCAAATAAGGTGAGGGTGGTAGCTGGTAGACAAGAGGGACAGGAAGAGTTTAATGTTTTCTTCTAAGTTGTCTTATATGGCTGAGAGTGAAGATGGAGATGACAATTTGCAGTTTCTGAACCCAGAAAAACCCTTGAAATATGATGTTTGGTGACAGGAGGGCCAGGAAAACATTTAAACTCTGTTAAAGCATTGCCTAAAATGTCAGCAGCGATTTTTAGGGACGTCACTGTGTGTCCTTCCCTCTACAGGGCACAGCAATATTGCTCATTTAGGGAAGAGGACTAATAGGTAAATGAACAGGTGAGAGTCTATGCTGGCTAGTTTCTTGTCAGCTTGACATAGGCTGGACTCATCAGGGAAGAGGGAACTTCAACTGGGGGGTTGCTTTCATCAAATGCTGTAGGAGAATCTGTGGGGATTGGTGACTGATAGGAAGGGTCCAGCTCACTGTCATAAGTGCCACTCCCCAGGGCTGAAGGTCCTATGCTGTATAAGAAAGCAGGCTGAGCAAGGCAGTAAGCAGAGTTCCTTGATGGTCTCTGCTTTGGTACCTGCCTCCAGGTTCCTGTCCCAGCTGTGTCTCATTGTGAACTATGAGGGTCTATAAGCCACTTTCCCCAAGTTTGTTTTGGTCAGTGTTTTACTATAGCAACAGAAACCTAAGTTGGGTGTAATCCAGTGTAAATTTAGGTAGTGAGAAGGTCTAGGGTGGGAAGACAGGGAATGAGAATTTGCACACAGGTCGCAGTCTCTGTGAGCGTGTGAGAAAAGCATTCTGGGTCCTTGATATAGCTGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAACTATTGGATGGGTCACACGGCCACCAATGGAGGAGCTAGAGAAAGTACCCAAGTAGCTAAAGGGAACTGCAGCCCTATATGTGGAACAACAATATGAACTAACCAGTACCCCGGAGCTCTTGTCTCTAGTTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCTTTAGACTTGCAAACTTAATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGTGGAAGTGGGTGGGTAGGGGATTGGGGGGTGGGGTGAGTATGGAGGACTTTTGGGATAGCATTGGAAATATAAACGGGGAAAATACCTAATTTAAAAAAAAAGAAAAAAAGAAAGAAAAGCATTCTGGACACAAGGAAAAGCAAATTCCAAGACGTGGCAGAAACAGACTCCATGGACTGTGAAGACAGTGATGGGACCTCTGTGGCTGGAGTGAGACAGAGACAAAGGGACAATGGCAGGAGACAGATCTAGACAGGAAGGTTTGGCTTAGTAGACCAAGGGAAGAAACTTGAATGATCTCTCAAGCATGATGGGAAAACAATGATTTTTCTATGGTCAAGTGTCTCAGTTAGGGTTTCTGTTGCTGTGATGAAACACTGTGACCAAATTGCGGATGAAAGGGTTTATCGGACTGAAGCTCCCAACTCACAATTCATCACTGAAGGAAGTCAGGACAGAAACTCAAGCAGGGAAGGAGCCTGGAGGCAGGAGTTGATGCAGAGACCATGGAAGGGTTCTGTTCACTGGCTTGCTCAGCCTGCTTTCTTATAGAACCCAGGACCAGCAGCCCAGATATAGCACTACCCACAATGGACTGGACCCTCCCCCCCATCGATTACCAATTAATAAAATATCCTTCAAGCTTCTCTGAAGCCTGATCTTGAGACATTTTCTCAGTTGAGGTTCCGTCTCCTCAGATGACTTTAGTGTCTGTCAAGTTGACTTAAGACTGCCCAGCGCATCAAGTGCTGTGATCTGATTGACATTGTTTACAAAGTCACCATGGATACCTTGTTGACACTGCTTGGCTTGTGAGGGGGGCAGGAAGGAAGCAGAGGAGGGGATGGACACAGGCCACCATGGCCGCAAAAGCACTGGTGACATGGTGACAGTGCAGGCCACACTTGTGGTCTGGAAGTCATTTGTGGTCCAGGTGTGATGAGTTGAAAAAAAGAAAAAGAAAAAAAATTACAGATTGAGAATTATCAGTGGAGCCTGGCTGGCTGATATACCATTTGATGATGTGGGAACAGCTGACAGGGAGGCTAGATGGGCAGAGACTAATGGAGATCAATCACTGTGTTAGGTCTAGAGATCTGTTGGACTTCTAAGTGCACTCGCCTGTGAACACAGTTCAAAGGACAGACGTCAAGACAGGGCCATAAATTGGATGTATTTGGATTAAAATTCCAGCTCTAATATTTTAATCATAAGTATAGACAATAATTAGGATGTTATAGACAAAAAAAACAGACTTGAAGTCAGAGCCTTAGGTGACCTCAACATTTTGATATAGTCAAAGGAAAGGGGTCTGAAACTTTGACCGGGAAAATAGGTTGAGAATGGACAGCCCTGATACCCTGGAGGCAAAGTCCCCATATCACCTTATGCTGTCCTGCATCAGGGAAGTTTATTTCTTCTTTTAGGCATCTTAACATGGCTGAGAATGTTATTTTTATGTGAGATGTCTGTAGAAGTCACAGCCACAATTTCAGACTCAACTGGAGCGGTACAGGAGTCTGGCTCACGAGAAAATGTGCCTGTCATGTGTCCTCGCACAGAGCAGGTGCTGGGGCCATGTCTGACATGAAGTGTTCTTTAAGCAACCAAGCTCCTCCGGTAGGCGAGCGTGCTCTGCTCGTCAGGCTGACACCAAGCAGTGCTCTTGCTGCAGATGTCATGTTCCTGTTGCAGAGGTCGCTGGCAGGTCAGACAGCAGCTTCTGTTCCTGTGGAGTCTGATCTACCCTCCCTGCCCTCCCCTTTGCACCCATGCTAGGCACAGGCAGTTTCTTCTTAGTGAGTGGCCAGAATTTCTTGCAGGGTAGAAATCTGAATGCATTCAAGTGTCTTCCAAGCAGTGTTTCAACTGTAAAGTACTATTTCCAGATTCATTTGTTACCAAAAAAATATTAATCTATAGAATCATACCTCCCTCAAAAGAAGAAAATGACCCTGTTTTATGTTGTGAGTGTCTATGCTCCATTTGGACTTTCTGCTTCTCTTTTGTTGTTTCTCTTCAGTGTAACAAGTCTCCTATGTCATGCTTGTGTTCTATACCAAAATAAAATGGCAGTTAAGAATACAGAAAAAGAAGCCACGTGTGGTATGCATGCTCTTAACTCCAGCACTTGGGAGGAGAGGTAGGCAGATCTCTGTGACTTTGAGGCTAGGCAGGACTATAAAGAGAGACCTTATCTCTAAGCAAATAAACAAACAAACCAGCCTCCATTAAAAAAAAAATCACCCTAGGGATATAAAGAAGCCGTATTATATCTTTGGCCTTGCTTGCAGGTTTACATAATTCTCACAATACTGTGGGCTGGGAACCACCCACTGTTGTGAGCAGGCGTGCTGAGAATCAGGGAATTTAAGTGCTGGAGTGGAGGAGAGGGCTTATTGCTCATACACCCGTATGCCTGGCAATGTGGCAGAAAAAGGTGTTGAGAGGGGCTGTCACAGGGCAGGGTTACATCAGTAACCCTGGTGCATGGAAGGAGGGACTTAAATCCAGCTAACTCTTCCTCTTATGTGATTGACAGGCTCAGGAGCAAATGACTTGCAGTGCAATGGGCCCAAGTCTTTCTGTTCCCAGGACCCTTATCACAGTGTTAGAAATTTGACATGGGAAATGTAAGAACTATTTGCTAACCCTTTTTTTTTTGGCGTCATGTTATTTGGTGTCAACCCATGTCATATGTCCACATAAATATTTTATGAGCAATAATTCTACTTTCTCACCCTCCAAATATACTGTGAAGAAATACAGAGGTATTAGTCTAACCCTGATAAAATTTAGGCTAGTGTTACATTGTAAGTGGCCAGTCTTGGCAGGAGAAGCTGAACCTTCATCAGCACTATCTTCCTGTCTGGGTTTGGAGAACTCAAAAACAGCTAGCTTATGACTTCCTTATAGGTCCTAAGCATGGACAGACAGATTGTCCCCATTTGTCTTTGTGATTTGAGGGAATGTTGCAGATGTGCCTGCACCTGGAGGATGGAGATTGTCAAATGCCTTTCCTAGATCATTTACATTTTGGGGGGGGGGGGTGGTGTCTCACTGAAGCTGAAGCCGCCATTCAGCTACGGTGGCTGGCCAGGGAGCTCCAGGAATCTGTCTGTCTCCATCTCCACAGTGCTAAGATCACAGGGGCACCAAACTTTTTTGTATGGATGCTAAAGTCCAAAGTCTGGTCGTCGCACAGCAAGTATTCCTGGCTGAGCCATCTCCCCTGCCCCAACTGTATCTTTTCCAAAGACTGATACAGTAACAAGAGGCTGGGTCTGGGAAAGTGGCTGTCCTTTAAGCTTTCTTCCACTTGATACATTTAAAGAAGATTCCTTGCATTTTCATTAATCACATTCAATTAGAGTTATCCTTCTGCAAAGTATGCGTTGGGCAGTTGGGACATCCTCCATCCAAATCTAGTAATTGTTTACAATTGAGCCTTCAAGTACTGGCCGTTGGTTCCAAGAATTACACACTCCTTAGAGATCTCTGGGAAGTTTCTGTTCCATTTGACATTCCTGTCCACCCCCATCTTTATTCCCCCTTTTCCTGACCTTTATGTTTACCCATCTAACTGTTGGCCAGCTTTGGTTTTCAATGTGATGGCGTGTCAGAAGTGCCGCTTAGAAACATAATGTGTTATGTATGGATAAAGAAGCAGGGGGCGTGGTTCCTGGGGAGACACACTTCTCCAGAGCCGTAGAGCATCATGCCTTGCAGGAAAAGGACAACTGCAAGAAGTCACCCCGAGGTTACTGACACTGATGCTTTAACAGGGAGAAAATATTTTCTTCCCAATGATTGGGAGGCAGCAATCACACCATATGCTCTGGACAGTGGTGATGGGTGAGGAAGGAGCTGGGTGGCTGCACCTTCAGCCTGTGCCTGCACTTCTTGAGAGTCTTATTTTCGACGGGTACCTCACTGGAAAAGCATGTGAATGATTTTGTCCCCTTATGTTCCAGTAGAAAAAGTGATCAAGCAGTGAATAGTGATCTTCTGACTCTGTGAGCATCAGACCCAGCCAATCTGATGCATTGTTGAAGCATCTCCATCCGACCAATCAGATACATTCGCTTGTGTTTTAGAGAAGCGACTGGATATAAGATGTCTTCTTGACAGTATCGTTGCAGGATCTTGCTGTGCATGGATTAAAGGTGCTGTTTAATAAGCTGTCTCTTGGTGATCTTTTTTTTTTTTTAATGTGTCTGCAG
Seq C2 exon
CTGTCTGTGAGAATGGATGCCAGAACGGGGGGCGTTGTATCGGCCCTAACCGCTGTGCTTGCGTTTATGGATTCACCGGGCCGCAGTGCGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-Fbn2:NM_010181:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: