DreINT0067452 @ danRer10
Intron Retention
Gene
ENSDARG00000087398 | fbn2b
Description
fibrillin 2b [Source:ZFIN;Acc:ZDB-GENE-090112-3]
Coordinates
chr22:4221934-4225640:-
Coord C1 exon
chr22:4225545-4225640
Coord A exon
chr22:4222030-4225544
Coord C2 exon
chr22:4221934-4222029
Length
3515 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGA
5' ss Score
7.69
3' ss Seq
ATCTTGTGTAAATTTTTCAGCGG
3' ss Score
6.61
Exon sequences
Seq C1 exon
TCCAGTCCTGCAGCGTCAGATGTATGAATGGTGGGATGTGTAATGAAGACGCCTGCTCCTGTCAGAAGGGATACACAGGAACTCACTGTGGACAAC
Seq A exon
GTAAGACTCATTTATAGCACTTTTGTTATGCATTTAATAATATATTTAAATTTATGGACCCACAAAACTAGTGCTGTCAAATGATGCATTTCAAAGTCAAAATAAAAGTTTGTATGTACTGCAGTGGGCGACCATGTGAGAGCTATAGCTGGCTATAATTTATTGGCACAGCCCTATATTTATATAGAAAATATGTATACCTAATGCAAATGATTTAATAATGACAATTTTAGTTTTGTAAATGTTTGTATTTTCTGTGTGTTTCTGTTTGTTCTGTATAATTATAAATCATTAAAATAAAGTTAACAAGTCATTTATAACTCGTTAACTAACAGCTTGTCTGTTATCTGTATCTGTTATCTATAAGGCAAAGTTATAAATAAGAAACAAACTATTAACTTTTATTTAACAAATCGTTTATAACACATTAACTAACCGTTTATCAATGGACTATAAACTAGTTATAACAAATAGTTATTCGAAAGTGTTACCAAATAAAACCTCCCAACCGCATCAGAGAAGCCTGATAGAAAATGCTCATTTACAAGAAAAGAGGTCTGATGAATTTAGAGGGTTTTGCATCTGAACTCTTCATAAATTATATGAGAGACTTGCTTTGTTTGCCAAATAAGTGGATTTAGATGGAATTGCATTGTAAACATGAAATAAAAGTTAAAAAGGTATTATTTCTCATTTCATATATTAAAGATCCCCTATTTTGCATTGAAAAAGGTCATATTTTAGTTTTAGGGGTCTTCAACAACAGGCTGATATGCGTGCAAGGTCAAAACACACTTTCATTGTCTTATAATATGCTTTTTTTATGCATTTACCGAACAATCCCAGCGGCTCCCATATGAATCGTTCAGCGATTAATTTGTTCCCAAACCCCTCCTTAGCACGAGGCTAATCTGCGCTGATTGGACCGATGGCCCAGTCTGTTGCGATTGGTCGTCAGCGTTCAGCACAAGACAGAAGGAAATTTAATTTACTTAATTAAATAGTTAGTTAGTTAATTAATCTACACAGTGGCAAAAAATTTTAATCGGTAATTTAAATAATTTAATTGAAAATCGGTAAAGGAAGAAGCACGCGTCGCATTTTTAACGTGGATTTGGACGCGATATGTGAACAGCCCCATACAGATTTAACCTGAGAGATACAGTACAAGCACTGATCTATAATAGATAGGGGATTACAAGCCACGCTGAGCAATTACAAGTTACAACACAAAATTAAACACATATTTTGTAAACTACACAAAACGAGGCAACAATTTTAACGACACTTACATGTCATGATCTGGAGGAAGAAGAAGCTGGTTCGTATGAACTGTAAAAGTTACTGACAAAGTCCCTGTCAAAGTCTGACAAAGTCCCATAGTCTCTGCTGCTCCTTCAATAGCAAAATCCCGGCGAATCCTGCGTTGCAATCCTAGGTTGTTGTATCAAAAATCAGAAAACTGACAGGAAGAAACACAGCACTAAGTCGGCTATAATGTGGTGTTGTTGTGAAAGTGAACTTTAGCCCTTTACTCCCCGCAGCCAGGGCTAGTGCGTCCATAGAGGTGACCTAGGCAGAATAGAGAGAGGGCGTCGGCGACATCTCCTCACTTTCGTCTGTGATAATATCGCCCACCGCCCCGGTTCTCGCTGTCGTACGCGCAATCACACGCTTTTGCCTAGAGCACCAGTTCAGTTTGCTCCGGCCCTGCCCGCACCCGAATCTCTGTCAGTGGTCGTCATCTTCGCGTCATGATCAGTCCCGTGATCCCCCGCACCAATGCTAGTGTGTGGAGGGAAAGCACGTGCACATTTTAACAGAACTGTAAGTACATATTGTGAGATGTACCGTATCGACGTCGATGTGATCCAACATATCATGCGAACCCTACTCGATTCATTTATTCGAGTCAAATATTTTGCTTCAGAATCAATAGTTTTAAACATGCTGCACTTTTAGATTTAAACCTCAGCTGGGCGTTTTCATTCAATTAGAGCTGTGTTACACACTGCATGGAAGCTTATTTTCAAAAACCCATAATAGGGGCTTATTTACACTCTTAAAAGAAACGGTTTTATATAGAACCAAAAATGGTTCTATCAAGCATTTCATATATGGAACCCCAAAACAGTTCTAAATAGAACCATCACAAGTGTTCATTAAATAGAACCCCAATTGGTTCTTCGAATTCAGGTTAGATGGTTCTATTTAGAACCATTTAAGGGTTCTTTATTTAGGTAGCAGTGCAGCACTCGTGCCCGCACCGAGTCTGTGTACGCGTGGCAGGCCAGAGTCACGGTGGCAGGCTAGATTGACCATCAGGCCACAGGGAAAGGTCCCGGTTCTCCCTATGGCCAGTCAGTCCCTGGATATTATTAAAACCTTTTAAAGCCAAACATATTTTAATAATCCATAGATGAAAGATCAGGTGTTATTTATAAAGGACACAAAAATGCTGGCTAAATGTATTTGAAATATTAAACCTTTAAGTATATATATATATATATATACTTAAAGGTTTAATATTTCAAATACATTTAGCCAGCATTTTTGTGTCCTTTATAAATAACGTATATATATATATATATATATATATATATATATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATAAGTATATATATATACTTAAAGGTTTATTGTGTAAATGATGAAGCTGTGGTGGACTTCTCCTTTCGAAAAATTAACCGTCACTCTCGAGGCTCTTCGCCACCTGTCCACGTCGATGATTATTAGTTTTAAATAAATTATTAAATCATAAAAACATGGTACTGCACAGTCTAAATAAATAAACCGGTTATTTTATTTATTTCACAAAATAATTTGTTAAAACTATTAAATATTAAGTATATATAAAATATAAGTTATATGCTAATGTGCAAACCTGAATGAAAAAAATCCCACCATACTGTACACTGATAAAGTTTTTGACCACAGCATTCATTTTATTAGGTTTTGACTCAAAAAGCTTTGTATATCTGTGTTAAAGCTTATAATTATTTTTCTTTACTAGATAATTATGTTATGAATCAAAAACTATAGAACCATTTTAATCAAAAAGGGTCTTTGCACTCAAAGGGTTCTAAATGGAACCATATTTTTTGGGTAAAATGTTCTACTGGCCAAGTATAGAACCCCAAGGTTCTATATAGAACCTCTAGGAACCTTTTTTTTTTTTAGAGTGTAGGTTATGATACTCCCAAAATAATTCTGCATAAATCCGCAGATTTATTACAAAATTCTTCGCAGAAATAGCTAAAAATGTCTGCAGATTCTGTCTGGGCCTGCCTTCAGCTGAAGAAAACTACATGATTGGGTTATTTGTTTATATTACTATAGTCGTTGTGTTACCAATGCTACACTAACATTACCTCAAAAATGAGATCACAAATTAAACAAATATCCCAAGCAAGCAATGTCTCAATGTCAAATTTCTAAAGTCTAATCTTGTGTAAATTTTTCAG
Seq C2 exon
CGGTGTGCGAGAGCGGATGTCAGAACGGCGGCCGCTGCATCGGACCCAACAGATGTGCCTGCGTTTACGGTTTCACCGGGCCGCAGTGCGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087398:ENSDART00000125302:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=39.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]