HsaINT0062535 @ hg19
Intron Retention
Gene
ENSG00000142449 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:18794]
Coordinates
chr19:8209761-8210822:-
Coord C1 exon
chr19:8210727-8210822
Coord A exon
chr19:8209857-8210726
Coord C2 exon
chr19:8209761-8209856
Length
870 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
TCACCCTCTCTCCTCCACAGCCA
3' ss Score
10.87
Exon sequences
Seq C1 exon
GGTCAGGGTGCAGTGTGAGCTGTATGAATGGGGGCACCTGCCGGGGGGCGTCCTGTCTGTGTCAGAAGGGCTACACAGGCACCGTGTGTGGGCAGC
Seq A exon
GTGAGTATCCCCATGGGACTCCCCTCTTTGCACACCTGGGACTGTGATCCCAGAGTATTAGTCTCTGCTGCCACCTGCCCACTGCCCAGGGTTCCTTCTTCCTGGACTGGAGATTGCAGGGGACGTTTATTGCCACAGTCTCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTGTGTCACTCAGGCTGGAGTGCAGTGGCAAGATCTCGGCTTACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCTTGCCTGACTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCTACCGTGCCCGGCCCTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGCTCTGTTGCCCAGGCTGGAATGCAGTGGCACCATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTTGAACAATTCTTCTGTGTCAGCCTCCTGAGTAGCTGGGATTAAAAGAGCCGGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAAAGATGGGGTTTCACTATATTGGACAGGCTGGTCTCGAACCCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGCGCTCGGATTACAGGCGCTAGCCACTCAGCTCAGCCTCAGTCTTATTCAACCTGGGCCAGATCCTGGGGATTCCTGGGTGAAGACAGGCTTGCTGTGAACCCCAGCTCTCTCTGCTGCTGGGGGACCTCCAGCCATCACCCTCTCTCCTCCACAG
Seq C2 exon
CCATCTGTGACCGCGGCTGCCACAATGGGGGTCGCTGCATTGGGCCCAACCGCTGCGCCTGTGTGTATGGCTTCATGGGACCTCAATGTGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142449-FBN3:NM_032447:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGGGTGCAGTGTGAGC
R:
TCTCTCACATTGAGGTCCCATGA
Band lengths:
190-1060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)