GgaEX6027649 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:269314-279006:+
Coord C1 exon
chr28:269314-269412
Coord A exon
chr28:274957-275052
Coord C2 exon
chr28:278911-279006
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGCTCTTCTCTACAGTCC
3' ss Score
10.44
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
CAATTTGCAGAAATTCTTGTGGCGATGGATTTTGTTCACGGCCAAACATGTGTACGTGCTCCAATGGACAACTCTCTCCCAACTGTGGCTCAGCTGGAG
Seq A exon
TCCAAACCTGCAATGTCAGATGCATGAATGGAGGAAGCTGCAATGAGGAATCTTGCCTCTGCCAGAAAGGTTACACTGGAACGTACTGTGGGCAGC
Seq C2 exon
CTGTCTGTGAAAATAGCTGTCAGAATGGAGGTCGCTGCATTGGACCAAACCGTTGTGCATGTGTATATGGATTTACCGGCCCCCAGTGTGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAATTCTTGTGGCGATGG
R:
TGGGGGCCGGTAAATCCATAT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]