BtaEX6054940 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011680 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr10:85098823-85101359:+
Coord C1 exon
chr10:85098823-85098883
Coord A exon
chr10:85099218-85099320
Coord C2 exon
chr10:85101226-85101359
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTGCCCCCTCCTCTCCACAGAGC
3' ss Score
12.23
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAGAGATGGGGGCTCCAGCTGCGTGGGTCCCACCCGGAGCCACCGCTCTTGCCGCACGGAG
Seq A exon
AGCTGTCCCGATGGCTCCCGCGACTTCAGGGCGGAGCAGTGCGCGGAGTTTGACAGCCACGAGTTCCAGGGGCGGCGCTACAAGTGGCTGCCCTACTACGGGG
Seq C2 exon
CAGCCCCCAACAAATGTGAGCTGAACTGCATCCCCAAGGGGGAGAGCTTTTACTACAAGCACAAGGAGGCCGTTGTAGACGGGACACCCTGTGAACCTGGCAGACGGGACATCTGTGTGGATGGCAGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011680-'3-4,'3-3,5-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(40.0=100)
A:
PF0009014=TSP_1=PD(2.0=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGCTGCGTGGGTCC
R:
CAGCTGCCATCCACACAGATG
Band lengths:
179-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]