GgaEX6038128 @ galGal3
Exon Skipping
Gene
ENSGALG00000009315 | PAPLN
Description
NA
Coordinates
chr5:28499545-28501060:-
Coord C1 exon
chr5:28501000-28501060
Coord A exon
chr5:28500598-28500700
Coord C2 exon
chr5:28499545-28499675
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCTCCTCCAAACAGAGC
3' ss Score
10.48
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GACAGAAAGTGCTTCCAGTTGCATTGGACCAACTCGAAGCTATCGCTCATGCAATATTCAG
Seq A exon
AGCTGCCCAGAAGGCTCCAGAGATTTCCGAGCAGAGCAGTGTGCAGAGTTTGATGGGACAGAATTTCAAGGAAAGAAATACAAGTGGCTTCCTTATTATGGAG
Seq C2 exon
CACCCAATAAGTGTGAGTTAAACTGTATTCCAAAGGGAGAAAACTTCTACTACAGACACAAGGAAACTGTGATAGATGGGACTACTTGTGAACCTGGCAAGCGGGATATCTGTGTAGAGGGAGTTTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(40.0=100)
A:
PF0009014=TSP_1=PD(2.0=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAGTGCTTCCAGTTGCA
R:
TGACAAACTCCCTCTACACAGA
Band lengths:
190-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]