BtaEX6055039 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86214588-86216261:-
Coord C1 exon
chr10:86216097-86216261
Coord A exon
chr10:86215623-86215838
Coord C2 exon
chr10:86214588-86214607
Length
216 bp
Sequences
Splice sites
3' ss Seq
TCTGACGCTTGAACTTGCAGAGG
3' ss Score
7.38
5' ss Seq
AGGGTATCT
5' ss Score
3.45
Exon sequences
Seq C1 exon
CGGACAAGGCCGTCTCCATGCAGCAGGGGCTGTGCTACCGGCTGCTGGGGCCCGGCACCTGCGCCCTGCCTTTGGCCCAGCGGATCACCAAGCAGATATGCTGCTGCAGCCGCGTGGGCAAAGCCTGGGGCAGCCTGTGTGAGAAATGCCCCCTGCCTGGCACAG
Seq A exon
AGGCCTTCAGGGAGATCTGCCCTGCGGGCCACGGCTACACCTACTCGAGCTCAGACATCCGCCTGTCCATGAGGAAAGCTGAGGAGGAGGAACTGGCCCGGCCCTCAAGGGACCGCGGCCCGAAGCGCAACGGGACCCTGCCCAGGCCAGCAGAGAGGCAGCCACTGCGGGCGGCCACCGGCACCTGGGTGGAGGCCGAGACCATCCCCGACAAGG
Seq C2 exon
GCGACTCTCAGGCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.699 C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.0=66.1)
A:
PF0068312=TB=PD(11.6=6.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGGCCGTCTCCATGC
R:
CTGGCTGGCCTGAGAGTCG
Band lengths:
183-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]