GgaEX6038598 @ galGal3
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
NA
Coordinates
chr5:40352841-40355200:-
Coord C1 exon
chr5:40355036-40355200
Coord A exon
chr5:40353913-40354143
Coord C2 exon
chr5:40352841-40352938
Length
231 bp
Sequences
Splice sites
3' ss Seq
GATTTAATTTTCCCCTGCAGGAG
3' ss Score
11.04
5' ss Seq
AGGGTAATT
5' ss Score
6.62
Exon sequences
Seq C1 exon
CTGACAAAGCAGTGTCGATGGAGCAGGGGCTGTGTTACCGCTCAGCAGCTGGAGGTGTGTGCTCCTTCCCCCTCTCCCACCGAATCACTCAGCAGATCTGCTGCTGCAGCCGCGTCGGCAAGGGCTGGGGCAAGAACTGTGAGGAATGCCCTGTGCCCGGCTCAG
Seq A exon
GAGCGTTCAAGGAGATTTGCCCAGCAGGACACGGCTATACCTACTCCAGCTCTGACATCCGCCTTTCCATGAGGAAAGCAGAGGCAGAAGAGCTGCCCCTAAGCCTGGAAGAGCACAGTGAGAGCAGCAACTGGACGTTAGACTGGGCAGCAAGGAGACAGCGGCTGCAGGACAGTTTGCATGGGAGTGTCCTGGAGGCATTGCCCCACCCCGACATCTCAGCAGGAGAGG
Seq C2 exon
ATACCTCCTCTGCATGGCATGGGCAGGGGTGGATGATGGAGGGCAGCAGGGATGCGGGGACGGTGCCTCTCCAGCGGGCCACGCTGGTTCTGCAGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258-'11-17,'11-15,13-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.128 C2=0.303
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.0=66.1)
A:
PF0068312=TB=PD(11.6=6.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGCAGTGTCGATGGAGC
R:
TCCCTGCAGAACCAGCGT
Band lengths:
260-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]