HsaEX6002949 @ hg38
Exon Skipping
Gene
ENSG00000168056 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr11:65551548-65552406:-
Coord C1 exon
chr11:65552248-65552406
Coord A exon
chr11:65551972-65552157
Coord C2 exon
chr11:65551548-65551564
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTCTGCTGTCTTGACTGCAGCTG
3' ss Score
7.97
5' ss Seq
GAGGTCTAG
5' ss Score
-2.05
Exon sequences
Seq C1 exon
CAGACAAACCGGAGGAGAAGAGCCTGTGTTTCCGCCTGGTGAGCCCTGAGCACCAGTGCCAGCACCCACTGACCACCCGCCTGACCCGCCAGCTCTGCTGCTGCAGTGTCGGCAAGGCCTGGGGCGCGCGGTGTCAGCGCTGCCCAACAGATGGCACCG
Seq A exon
CTGCGTTCAAGGAGATCTGCCCAGCTGGGAAGGGATACCACATTCTCACCTCCCACCAGACGCTCACCATTCAGGGCGAGAGTGACTTTTCCCTTTTCCTGCACCCTGACGGGCCACCCAAGCCCCAGCAGCTTCCGGAGAGCCCTAGCCAGGCTCCACCACCTGAGGACACAGAGGAAGAGAGAG
Seq C2 exon
GGGTGACCACGGACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168056-'12-31,'12-28,15-31=AN
Average complexity
A_S
Mappability confidence:
90%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.609 C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=66.7)
A:
PF0068312=TB=PD(11.9=7.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains