DreEX0044084 @ danRer10
Exon Skipping
Gene
ENSDARG00000035682 | ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060526-130]
Coordinates
chr5:36961305-36963175:+
Coord C1 exon
chr5:36961305-36961457
Coord A exon
chr5:36962965-36963078
Coord C2 exon
chr5:36963162-36963175
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATTTGCTTTGTCTCTTTAGCTT
3' ss Score
7.9
5' ss Seq
CTGGTACAG
5' ss Score
3.91
Exon sequences
Seq C1 exon
CAACAGTTGAGCTGGGGTACTGTTTTCGCATGGTTACGGAAACAGGGAAATGTGAGCACGCTCTTTCAACACGCCTTTCCCAGGAGATGTGCTGCTGCACTGTGGGTAAAGCATGGGGAAGCAACTGTGAGAGGTGCCCACAGGATGGCACAG
Seq A exon
CTTCCTTTAATAAGATATGTCCAGCAGGAAAGGGAATGTCTTTACAGACCTATCACGGTACTCTGACCTTTCAGCCCTTCCTGACCAGCATTGAACACATTAATCCTGACACTG
Seq C2 exon
AAGTCAAGCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035682-'9-12,'9-11,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=69.2)
A:
PF0068312=TB=PD(11.9=12.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]