RnoEX6006171 @ rn6
Exon Skipping
Gene
ENSRNOG00000020813 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:RGD Symbol;Acc:62057]
Coordinates
chr1:221105203-221106213:+
Coord C1 exon
chr1:221105203-221105361
Coord A exon
chr1:221105458-221105643
Coord C2 exon
chr1:221106197-221106213
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGTCTACATCTTGACCACAGCAG
3' ss Score
4.53
5' ss Seq
GAGGTCTGG
5' ss Score
2.59
Exon sequences
Seq C1 exon
CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTCGTGAGCACTGAGCATCAGTGCCAGCACCCACTGACCACACGCCTCACACGCCAGCTCTGCTGCTGCAGTGTGGGTAAAGCCTGGGGCGCCCGGTGCCAGCGCTGCCCAGCAGATGGTACAG
Seq A exon
CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACCCTCACCATCCAGGGTGAAAGTGATTTCTCCCTCTTCCTGCACCCTGATGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCAGCACTCGAGGACACAGAGGAAGAGAGAG
Seq C2 exon
GAGTGACCTTGGACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020813-'9-17,'9-13,10-17=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.619 C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=66.7)
A:
PF0068312=TB=PD(11.9=7.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]