MmuEX0027247 @ mm9
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:86149375-86150699:-
Coord C1 exon
chr12:86150535-86150699
Coord A exon
chr12:86150098-86150313
Coord C2 exon
chr12:86149375-86149394
Length
216 bp
Sequences
Splice sites
3' ss Seq
ATCTCCTGTTGTTTTTTTAGAAG
3' ss Score
8.99
5' ss Seq
AAGGTCTCT
5' ss Score
0.9
Exon sequences
Seq C1 exon
CGGACAAGGCTGTCTCCATGCAGCAGGGACTATGCTACCGGTCACTGGGGTCTGGTACCTGCACCCTGCCTTTGGTTCATCGGATCACCAAGCAGATATGCTGCTGCAGCCGTGTGGGCAAAGCCTGGGGTAGCACATGTGAACAGTGTCCCCTGCCTGGCACAG
Seq A exon
AAGCCTTCAGGGAGATCTGCCCTGCTGGCCATGGCTACACCTACTCGAGCTCAGACATCCGCCTGTCTATGAGGAAAGCCGAAGAAGAGGAACTGGCTAGCCCCTTAAGGGAGCAGACAGAGCAGAGCACTGCACCCCCACCTGGGCAAGCAGAGAGGCAACCACTCCGGGCAGCCACCGCCACCTGGATTGAGGCTGAGACCCTCCCTGACAAAG
Seq C2 exon
GTGACTCTCGGGCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.712 C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(86.0=66.1)
A:
PF0068312=TB=PD(11.6=6.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCTGTCTCCATGCAGC
R:
CTGAACAGCCCGAGAGTCAC
Band lengths:
181-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: