BtaEX6055042 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86204520-86210516:-
Coord C1 exon
chr10:86210388-86210516
Coord A exon
chr10:86209521-86209649
Coord C2 exon
chr10:86204520-86204639
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCCCATCTCCCTCTGCTCAGATG
3' ss Score
8.56
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCATAGACAGATGTGCTGCTGGGGCCACCAACATCTGTGGCCCGGGCACCTGCGTGAACCTCCCGGATGGATACAGATGCATCTGCAGCCCCGGCTACCGGCTGCACCCCAGCCAGGCCTACTGCACAG
Seq A exon
ATGACAATGAGTGTCTGAGGGACCCCTGCAAAGGAAGGGGACGCTGTGTCAACCGTGTGGGCTCCTACTCCTGCTTCTGCTACCCTGGCTACAAGCTGGCCACCTCGGGGGCCACACAGGAATGCCAAG
Seq C2 exon
ACATAGATGAGTGTGAGCAGCCAGGGGTGTGCAGCCGGGGTCGGTGCACCAACACGGAGGGTTCCTACCACTGTGAGTGTGACCAGGGCTACATCATGGTCAGGAAAGGACATTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGTGCTGCTGGGGC
R:
CTTGGCAATGTCCTTTCCTGAC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]