RnoEX6029359 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108519861-108525409:-
Coord C1 exon
chr6:108525281-108525409
Coord A exon
chr6:108524525-108524653
Coord C2 exon
chr6:108519861-108519980
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCTCCTTCCGGTCAGATG
3' ss Score
8.08
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTTTGATCCATGTTTCGCTGGAGCCTCCAACATCTGTGGCCCTGGGACCTGTGTGAAGCTCCCAAATGGATACAGATGTGTCTGCAGCCCTGGTTACCAGCTACACCCCAGCCAGGACTACTGTACTG
Seq A exon
ATGACAACGAGTGTCTGAGGAACCCCTGTGAAGGAAGAGGGCGCTGTGTCAACAGTGTGGGCTCCTACTCCTGCCTCTGCTACCCAGGCTACACACTAGCCACCCTAGGAGACACACAGGAGTGCCAAG
Seq C2 exon
ATGTGGATGAGTGTGAGCAGCCGGGGGTGTGCAGCGGTGGACGATGCAGCAACACTGAGGGCTCGTACCACTGCGAGTGTGATCAGGGCTACGTCATGGTCAGAAGAGGACACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(83.3=45.5)
A:
PF126622=cEGF=PD(12.5=6.8),PF0000822=EGF=WD(100=70.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCATGTTTCGCTGGAGC
R:
GGCAGTGTCCTCTTCTGACCA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]