GgaEX6038601 @ galGal4
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr5:37222229-37223161:-
Coord C1 exon
chr5:37223036-37223161
Coord A exon
chr5:37222647-37222775
Coord C2 exon
chr5:37222229-37222348
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTGCCTGAGCACAGATG
3' ss Score
2.2
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
AGGCCAGCGGCTGTGCTTCTTCATCCCTTGCCTGTGGAGCTGGTGTGTGTGTGCTCACCCCAGATGGATACAGCTGCTCATGCCACCTGGGCTATACGCTGCACCCCAGTCGTCTGCACTGTGTTG
Seq A exon
ATGAAGATGAGTGTCTGCAAGATCCTTGCACTGGAAAAGGTCACTGTGTCAACAGCGTGGGCTCCTATTCATGCCTCTGCTACTCTGGGTACACTCTGGTTTTCTTGGAGAGCAAGCAGACCTGTCAGG
Seq C2 exon
ATCGAGATGAATGTGAGCAGCCTTCTACATGTCCGGGACAACGATGTGTCAACACCCCCGGCTCCTACCGTTGCGAGTGCAAGGAGGGCTTTGCCATGGGCCTCCGAGGACAATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258-'23-29,'23-28,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF062476=Plasmod_Pvs28=PU(19.2=82.9),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGCTGTGCTTCTTCATC
R:
CTTCACATTGTCCTCGGAGGC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]