BtaEX6055044 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86198287-86204639:-
Coord C1 exon
chr10:86204520-86204639
Coord A exon
chr10:86199498-86199617
Coord C2 exon
chr10:86198287-86198409
Length
120 bp
Sequences
Splice sites
3' ss Seq
AGGGGTTGTTATTTTTCCAGATA
3' ss Score
6.29
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
ACATAGATGAGTGTGAGCAGCCAGGGGTGTGCAGCCGGGGTCGGTGCACCAACACGGAGGGTTCCTACCACTGTGAGTGTGACCAGGGCTACATCATGGTCAGGAAAGGACATTGCCAAG
Seq A exon
ATATCAACGAATGCCGTCACCCTGGCACCTGCCCTGATGGGAAATGCGTCAACTCCCCCGGCTCCTACACTTGCCTGCCCTGCGAGGAGGGCTACAGGGGCCAGGGCGGGAGCTGTGTAG
Seq C2 exon
ATGTGAATGAGTGTCTGACCCCTGGGGTCTGCACCCACGGAACATGCATCAACCTGGAGGGCTCCTTTAGATGCTCCTGTGAGCAGGGCTACGAAGTCACCCCAGACGAGAAGGGCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'24-24,'24-22,27-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAGATGAGTGTGAGCAGCCA
R:
CTTGGCAGCCCTTCTCGTCT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]