RnoEX6029361 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108514828-108519980:-
Coord C1 exon
chr6:108519861-108519980
Coord A exon
chr6:108515925-108516044
Coord C2 exon
chr6:108514828-108514950
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGCTTTTTTTTTTTTTATAGATA
3' ss Score
9.51
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGAGCAGCCGGGGGTGTGCAGCGGTGGACGATGCAGCAACACTGAGGGCTCGTACCACTGCGAGTGTGATCAGGGCTACGTCATGGTCAGAAGAGGACACTGCCAAG
Seq A exon
ATATCAACGAATGCCGTCACCCTGGTACCTGCCCTGATGGGAGATGCGTCAACTCCCCTGGCTCCTACACTTGTCTGGCCTGTGAGGAGGGCTACATAGGGCAGAGCGGGAACTGTGTAG
Seq C2 exon
ATATGAATGAGTGTCTGACCCCCGGGATATGTGCCCATGGAAGGTGCATCAACATGGAAGGCTCCTTTAGATGCTCTTGTGAGCCAGGCTATGAGCTCACCCCAGACAAGAAGGGCTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094-'30-21,'30-20,32-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAGTGTGAGCAGC
R:
CTCGGCAGCCCTTCTTGTCT
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]