BtaEX6058379 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29004320-29011264:-
Coord C1 exon
chr15:29011102-29011264
Coord A exon
chr15:29009696-29009868
Coord C2 exon
chr15:29004320-29004418
Length
173 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTGTGGCTTTGGCAGTAC
3' ss Score
4.62
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ACTGTGGCCTGAGGGCCATGACCGGGCGGATCGTGGGAGGGGCGCGGGCCCCAGAAAGCAAGTGGCCATGGCAAGTCAGCCTGCAGTTCTCCCGTACCCACATTTGTGGGGGCACGCTGATCGATGCCCAGTGGATTCTCACCGCCGCCCACTGCTTCTTTAT
Seq A exon
TACCCGGGAGAAGATTTTGGAGGGCTGGAAGGTGTACGTGGGCACCAACGATCTGCACCACCTGCCCGAGTCAGCCTCCGTCGCCCAGATCATCATCAACAGCAACTACTCAGATGATCAGGACGACTATGACATCGCCCTCATGCGGCTCTCCAAGCCCCTGACCCTGTCCG
Seq C2 exon
CTCATGTCCACCCTGCCTGCCTCCCCATGCACGGACAGACCTTCGGCCTCAATGAGATCTGCTGGATCACAGGCTTTGGCAAGACCAAGGAGACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.5=9.1),PF0008921=Trypsin=PU(19.2=80.0)
A:
PF0008921=Trypsin=FE(25.3=100)
C2:
PF0008921=Trypsin=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGGCCATGACCGG
R:
GGTCTTGCCAAAGCCTGTGAT
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]