MmuEX6065515 @ mm9
Exon Skipping
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45146339-45151343:+
Coord C1 exon
chr9:45146339-45146501
Coord A exon
chr9:45147318-45147490
Coord C2 exon
chr9:45151245-45151343
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATACCCTATGGCTCTTGTAGGAC
3' ss Score
7.66
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACTGTGGTTTGAGAGCTATGACCGGGCGGATCGTGGGAGGGGCTCTGACCTCGGAGAGCAAGTGGCCCTGGCAAGTTAGCCTGCACTTCGGCACCACCCACATCTGTGGGGGCACACTCATCGATGCCCAGTGGGTGCTCACCGCTGCCCACTGTTTCTTTGT
Seq A exon
GACCCGGGAGAAGCTGCTGGAGGGGTGGAAGGTGTATGCAGGCACCAGCAACTTGCACCAGCTGCCCGAGGCTGCCTCTATCTCCCAGATCATCATCAACGGCAACTACACAGATGAACAGGATGACTATGACATTGCCCTCATCAGGCTGTCCAAGCCCCTGACCCTGTCAG
Seq C2 exon
CTCACATCCACCCTGCCTGCCTCCCCATGCATGGTCAGACCTTCGGCCTCAATGAGACCTGTTGGATCACGGGCTTTGGCAAAACCAAGGAGACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.5=9.1),PF0008921=Trypsin=PU(19.2=80.0)
A:
PF0008921=Trypsin=FE(25.3=100)
C2:
PF0008921=Trypsin=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGAGAGCTATGACCGGGC
R:
GTTTTGCCAAAGCCCGTGATC
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: