MmuEX6065515 @ mm10
Exon Skipping
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45338256-45343260:+
Coord C1 exon
chr9:45338256-45338418
Coord A exon
chr9:45339235-45339407
Coord C2 exon
chr9:45343162-45343260
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATACCCTATGGCTCTTGTAGGAC
3' ss Score
7.66
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACTGTGGTTTGAGAGCTATGACCGGGCGGATCGTGGGAGGGGCTCTGACCTCGGAGAGCAAGTGGCCCTGGCAAGTTAGCCTGCACTTCGGCACCACCCACATCTGTGGGGGCACACTCATCGATGCCCAGTGGGTGCTCACCGCTGCCCACTGTTTCTTTGT
Seq A exon
GACCCGGGAGAAGCTGCTGGAGGGGTGGAAGGTGTATGCAGGCACCAGCAACTTGCACCAGCTGCCCGAGGCTGCCTCTATCTCCCAGATCATCATCAACGGCAACTACACAGATGAACAGGATGACTATGACATTGCCCTCATCAGGCTGTCCAAGCCCCTGACCCTGTCAG
Seq C2 exon
CTCACATCCACCCTGCCTGCCTCCCCATGCATGGTCAGACCTTCGGCCTCAATGAGACCTGTTGGATCACGGGCTTTGGCAAAACCAAGGAGACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129-'3-17,'3-11,13-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.5=9.1),PF0008921=Trypsin=PU(19.2=80.0)
A:
PF0008921=Trypsin=FE(25.3=100)
C2:
PF0008921=Trypsin=PD(23.7=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGAGAGCTATGACCGGGC
R:
GTTTTGCCAAAGCCCGTGATC
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types