BtaEX6058750 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32288207-32299284:+
Coord C1 exon
chr15:32288207-32288799
Coord A exon
chr15:32290093-32290666
Coord C2 exon
chr15:32298683-32299284
Length
574 bp
Sequences
Splice sites
3' ss Seq
ACAGTGATTTAACTTTTCAGGTG
3' ss Score
8.99
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCGTCACGCCCTGCACGGAGGGCTGCGAATGCAACGAAGGCTTTGTCCTCAGCACCAGCCAGTGCGTCCCGCTGCACAAGTGCGGCTGTGACTTCGACGGCCACTACTACGCCATGGGCGAGTTCTTCTGGGCCACGGCTAACTGCACGGTACAGTGCCTGTGCGAGGAGGGCGGCGACGTGTACTGCTTCAACAAGACGTGCCGTGGCGGGGAGGTGTGCGCCGTGGAGGACGGCTATCAGGGCTGCTTCCCCAAGCGGGAGACCGTGTGCCTGCTCAGCCAGAGCCAGGTACTGCACACCTTCGACGGCGCCGCCTACGCCTTCCCCGCCGAGTTCTCCTACACGCTCCTCAAGACCTGCCCCGAGCGGCCGGAGTACTTGGAAATCGACATCAACAAGAAGAAGCCCGAGGCGGGGCCCGCCTGGCTGCGGGGTGTCCGGATCCTGGTGGCCGACCAAGAGGTCAAGATAGGAGGCATTGGGGCTTCGGAGGTCAAG
Seq A exon
GTGAATGGTCAGGAAGTGGAACTGCCTTTTTTCCATCCTTCGGGGAAGCTGGAAATCTATCGAAACAAAAGCAGCACGACGGTGGAGTCCAGGGGTGTGCTGACCGTGCAGTACTCAGACGTGGGTCTGCTCTACATCCGACTCTCCACGGCCTACTTTAACTGCACTGGGGGGTTGTGTGGCTTCTTCAATGCCAACGCCAGCGACGAGTTCTGTCTCCCCACTGGCAAGTGCACGGACAACCTGGCAGTGTTCCTGGAGAGCTGGACCACTTTCGAGGAGATCTGCAATGGGGAGTGCGGGGACCTGCTGAAGGCCTGCAACAACGACTCGGAGCTGCTGAAGTTCTACCGCAGCCGTTCCAGGTGCGGCATCATCAACGACCCCTCCAACAGCTCCTTCCTGGAGTGTCACAGTGTGGTCAACGTCACCGCTTACTACCGCACCTGCCTCTTCCGCCTGTGTCAGAGCGGGGGCAATGAGTCGGAGCTGTGTGACTCCGTGGCCCGGTACGCAAGTGCCTGCAAGAACGCCGATGTGGAGGTGGGCCCCTGGAGAACCCACGACTTCTGCC
Seq C2 exon
CTCTGGAGTGCCCGGAGAACAGCCATTTCGAGGAGTGCATGACGTGTACGGAGACCTGTGAGACCCTGGCCCTGGGCCCCATCTGTGTGGACACCTGCTCCGAGGGGTGTCAGTGTGACGAGGGCTATGCCCTGCAAGGCAGCCAGTGCGTCACCCGGAGCGAGTGTGGCTGCAACTTCGAAGGGCACCAGCTTGCCACCAATGAGACCTTCTGGGTGGACCTGGACTGCCAGATCTTCTGCTACTGCAATGGCACGGACAACAGCGTCCACTGTGAGACCATCCCCTGCAAGGACGACGAGTACTGCATGGAGGAAGGCGGCCTCTACTACTGCCAGGCCCGCACTGACGCCTCCTGCGTCGTCTCGGGCTACGGCCACTACCTGACCTTTGACGGCTACCCCTTTGACTTCCAAACCAGCTGCCCGCTCATCCTGTGCACCACAGGAAGCAGGCCGAACTCAGACACGTTCCCCAAGTTCGTCGTCACAGCCAAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
A:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.4),PF127142=TILa=WD(100=28.4),PF0009420=VWD=PU(50.9=40.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGGAGTACTTGGAAATCG
R:
CCAGAAGGTCTCATTGGTGGC
Band lengths:
346-920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]