GgaEX6025634 @ galGal4
Exon Skipping
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3539692-3543443:-
Coord C1 exon
chr24:3542865-3543443
Coord A exon
chr24:3541244-3541817
Coord C2 exon
chr24:3539692-3539972
Length
574 bp
Sequences
Splice sites
3' ss Seq
ACCAATGCCTTCCCTTGCAGGTG
3' ss Score
12.14
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCACTGCACCCTGCGCCGAGGGCTGTGAGTGTGACGATGGCCATGTGCTGAGCGCCGACCGCTGCATCCCTGTGCAGAAGTGCGGCTGTGATGTGGACGGACGGTACTACGCCGTCGGAGAGGTGTTCTGGGCAACAGCGGACTGCACAGCAGAGTGCCAGTGCGAGGACGGTGGGGAGGCCAAGTGCTTCAACACCAGCTGCCCCGAAGGAGAGGTCTGCACCATTGAGGATGGCTACCGGGGCTGCTACCCAAAGCGGGAGGGCCTGTGCTCGGTGGGACAGAACCAGGTGCTGCGGACGTTTGATGGTGTCACCTTCCCCTACCCGCTGGAGCACTCTTACACACTGCTCAAAACATGCATGGAGAAGCCTGACTTCATTGAGGTGGACATCAGTCAGAAGAAGCCGGGATACGCTCCCAATGGGCTGCGCGTCATGCGGATCCAGGTGGTTGGCCAAGAGGTGAAGGTTGGAGGAGCCAGCCTGTCAGAGGTCAAG
Seq A exon
GTGAATGGCTATGATGTGGACCTGCCATATTTCCACCCTTCTGGCCACCTGGAGATCTACCGCACTGACAACGGCACTGTGACGGAGTCAGAGGGACTCCTGAGCATTGGCTACTATGATTCAGGCCTCTTAGAGATCCGCCTCTCCACCGCCTACTTCAACTGCACGGGGGGCCTGTGTGGCTTCTTCAATGGCAATGACAGTGACGAGTTCTGCACGCCCAAGGGCAAGTGCACAGACAACCTGGAGCTCTTCCTGGAGAGCTGGACAACGTTCGATGAGATCTGCAACGGGGAGTGTGGGGACCTCCTCAAGGCATGCAACAATGACTCGGAGCTGCTCAAGACTTACCGGAGCCGCTCCAACTGCGGCATCATCAATGACCCCACCAACAGCTCCTTCCTGGAGTGCCACAACGTGGTCAACGTCTCGGCCTACTACAGAACATGCCTCTTCCGCCTGTGCCAGAGTGGAGGCAACCAGTCAGAGCTGTGCGATGCAGTGGCACGCTATGCCAGTGCCTGCAAGAACGCCGAGGTGGACGTTGGCCAGTGGAGGAGCCACAGCTTTTGCC
Seq C2 exon
CCCTGGCATGCCCAGAAAACAGCCATTTTGAGGAGTGCATGAGCTGCGTGGAGACCTGTGAGACTCTGGCCACGGGCCCTGTCTGCATGGACACCTGCACAGAGGGCTGCCAGTGTGATGAGGGCTTTGCCCTGCGCGGCTCCCACTGTGTGCCCCGTGGCGAGTGCGGCTGCAACTTTGAGGGCCGCCAGCTGGCCACCAACCAGACCTTCTGGATGGACATCTCCTGCCACTTCCTCTGCTACTGCAATGGCTCAGACAACAGTGTGTACTGCGAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=WD(100=28.0),PF127142=TILa=WD(100=29.0),PF0009420=VWD=PU(49.4=39.4)
A:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=56.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTCTGCACCATTGAGGA
R:
AGAGTCTCACAGGTCTCCACG
Band lengths:
356-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]