GgaEX6025634 @ galGal3
Exon Skipping
Gene
ENSGALG00000006614 | TECTA
Description
NA
Coordinates
chr24:3574659-3578754:-
Coord C1 exon
chr24:3578162-3578754
Coord A exon
chr24:3576541-3577114
Coord C2 exon
chr24:3574659-3575269
Length
574 bp
Sequences
Splice sites
3' ss Seq
ACCAATGCCTTCCCTTGCAGGTG
3' ss Score
12.14
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCACTGCACCCTGCGCCGAGGGCTGTGAGTGTGACGATGGCCATGTGCTGAGCGCCGACCGCTGCATCCCTGTGCAGAAGTGCGGCTGTGATGTGGACGGACGGTACTACGCCGTCGGAGAGGTGTTCTGGGCAACAGCGGACTGCACAGCAGAGTGCCAGTGCGAGGACGGTGGGGAGGCCAAGTGCTTCAACACCAGCTGCCCCGAAGGAGAGGTCTGCACCATTGAGGATGGCTACCGGGGCTGCTACCCAAAGCGGGAGGGCCTGTGCTCGGTGGGACAGAACCAGGTGCTGCGGACGTTTGATGGTGTCACCTTCCCCTACCCGCTGGAGCACTCTTACACACTGCTCAAAACATGCATGGAGAAGCCTGACTTCATTGAGGTGGACATCAGTCAGAAGAAGCCGGGATACGCTCCCAATGGGCTGCGCGTCATGCGGATCCAGGTGGTTGGCCAAGAGGTGAAGGTTGGAGGAGCCAGCCTGTCAGAGGTCAAG
Seq A exon
GTGAATGGCTATGATGTGGACCTGCCATATTTCCACCCTTCTGGCCACCTGGAGATCTACCGCACTGACAACGGCACTGTGACGGAGTCAGAGGGACTCCTGAGCATTGGCTACTATGATTCAGGCCTCTTAGAGATCCGCCTCTCCACCGCCTACTTCAACTGCACGGGGGGCCTGTGTGGCTTCTTCAATGGCAATGACAGTGACGAGTTCTGCACGCCCAAGGGCAAGTGCACAGACAACCTGGAGCTCTTCCTGGAGAGCTGGACAACGTTCGATGAGATCTGCAACGGGGAGTGTGGGGACCTCCTCAAGGCATGCAACAATGACTCGGAGCTGCTCAAGACTTACCGGAGCCGCTCCAACTGCGGCATCATCAATGACCCCACCAACAGCTCCTTCCTGGAGTGCCACAACGTGGTCAACGTCTCGGCCTACTACAGAACATGCCTCTTCCGCCTGTGCCAGAGTGGAGGCAACCAGTCAGAGCTGTGCGATGCAGTGGCACGCTATGCCAGTGCCTGCAAGAACGCCGAGGTGGACGTTGGCCAGTGGAGGAGCCACAGCTTTTGCC
Seq C2 exon
CCCTGGCATGCCCAGAAAACAGCCATTTTGAGGAGTGCATGAGCTGCGTGGAGACCTGTGAGACTCTGGCCACGGGCCCTGTCTGCATGGACACCTGCACAGAGGGCTGCCAGTGTGATGAGGGCTTTGCCCTGCGCGGCTCCCACTGTGTGCCCCGTGGCGAGTGCGGCTGCAACTTTGAGGGCCGCCAGCTGGCCACCAACCAGACCTTCTGGATGGACATCTCCTGCCACTTCCTCTGCTACTGCAATGGCTCAGACAACAGTGTGTACTGCGAGAACGTCTCCTGCAAGGATGATGAGTACTGCCTAGAAGAGAACGGCCTCTACTACTGCCACGTCCGCACTGATGCCTCCTGCATCGTCTCTGGCTACGGGCACTACCTGACATTCGATGGCTTCTCATTCGACTTCCAGAGCAGCTGTGCCCTGGTGCTGTGCACCACCATCTCACGGCCGCGTGCGGAGCGGTCAGACACCTTCCCCACGTTCACTGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
A:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.0),PF127142=TILa=WD(100=27.9),PF0009420=VWD=PU(51.9=41.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTCTGCACCATTGAGGA
R:
AGAGTCTCACAGGTCTCCACG
Band lengths:
356-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]