BtaEX6058752 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32278993-32288799:+
Coord C1 exon
chr15:32278993-32279405
Coord A exon
chr15:32285694-32286264
Coord C2 exon
chr15:32288207-32288799
Length
571 bp
Sequences
Splice sites
3' ss Seq
ACTATTGCTGTTGTTGGCAGGTT
3' ss Score
7.15
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GACAGTTCCTTCGGCGAGGGGAGGTGTTCTGGGATGACCTGAACTGCACCATCAAGTGCCGCTGTCTGGATTTCAACAACGAGATCTACTGCCAGGATGCCTCCTGCAGCCCCTACGAGCTGTGCGAACCCAAAGGCAGATTCTTCTACTGCAGCCCGGTGGAGACCAGCACGTGTGTGGTGTTCGGGGAGCCGCACTACCACACGTTTGATGGCTTCCTCTTCCACTTTCAAGGCTCTTGTGCCTACCTATTGGCCCGACAGTGTTTGCAGACTTCCAGTCTCCCCTTCTTCAGCGTGGAGGCCAAGAATGAGCACCGGGGGGGCTCAGCCGTCTCCTGGGTGAAGGAGCTCTCGGTGGAGGTGAATGGTTACAAGATTCTCATCCCCAAAGGAAGCTATGGAAAAGTCAAG
Seq A exon
GTTAATGACCTAGTGGCTTCTTTGCCCGTCACCTTAGAATTGGGGGCGGTGAAAATCTACCAGAGTGGCATGTCTACTGCCGTGGAAACGGATTTTGGGCTCTTAGTGACATTTGACGGCCAGCACTACGCCTCCATCTCCATCCCAGGCTCCTACATCAATTCCACGTGCGGACTCTGCGGGAACTACAACAAAAACCCTCTGGATGACTTCCTGCGCCCTGACGGCAGGCCGGCCATGTCAGTCCTGGACCTGGGAGAGAGCTGGCGGGTCTACCACATGGAGTGGAAGTGCGACTCGGGCTGCGTGGACAACTGCACTCAGTGTGACACGGCCACCGAGGCCCTCTACTTTGGTCCCGACTACTGTGGCTTCCTCAACAGGACGGACGGTCCCCTGTGGGAGTGTGGCACTGTTATGGACCCCACGGCCTTCATGCACAGCTGCGTGTATGACTTGTGCAGTGTGAGGGACAATGGGACCCTCCTGTGTCAGGCCATCCAGGCCTATGCCCTTGTGTGCCAAGGCTTGGGCATTCCGATTGGAGACTGGCGCATCCAGACTGGGTGTG
Seq C2 exon
TGTCCACCGTGCAGTGCCCGAGCTTCAGCCACTACTCCGTGTGCACCAGCAGCTGCCCAGACACGTGCTCGGATCTGACGGCCTCGCAGAACTGCGTCACGCCCTGCACGGAGGGCTGCGAATGCAACGAAGGCTTTGTCCTCAGCACCAGCCAGTGCGTCCCGCTGCACAAGTGCGGCTGTGACTTCGACGGCCACTACTACGCCATGGGCGAGTTCTTCTGGGCCACGGCTAACTGCACGGTACAGTGCCTGTGCGAGGAGGGCGGCGACGTGTACTGCTTCAACAAGACGTGCCGTGGCGGGGAGGTGTGCGCCGTGGAGGACGGCTATCAGGGCTGCTTCCCCAAGCGGGAGACCGTGTGCCTGCTCAGCCAGAGCCAGGTACTGCACACCTTCGACGGCGCCGCCTACGCCTTCCCCGCCGAGTTCTCCTACACGCTCCTCAAGACCTGCCCCGAGCGGCCGGAGTACTTGGAAATCGACATCAACAAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(89.3=36.2),PF0009420=VWD=PU(50.3=57.2)
A:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACGTTTGATGGCTTCCT
R:
AGGACAAAGCCTTCGTTGCAT
Band lengths:
356-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]