DreEX6014067 @ danRer10
Exon Skipping
Gene
ENSDARG00000059558 | tecta
Description
tectorin alpha [Source:ZFIN;Acc:ZDB-GENE-110411-120]
Coordinates
chr5:62532159-62534937:-
Coord C1 exon
chr5:62534758-62534937
Coord A exon
chr5:62534032-62534602
Coord C2 exon
chr5:62532159-62532772
Length
571 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTCTGTTGTTCCAGGTG
3' ss Score
10.55
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGTACTTGCTCATACCTGTTGGCTCGCCCATGCTGGGAAATGCCTGGTTTGCCCTTTTTCAGTGTGGAGGCCAAGAATGAGAACCGTGGTGTGCCCACGGTGTCCTGGCTGCGGGACGTGACAGTAGAGGTGTACAATCACCGTGTTACACTACCCAAAGGAACTCTGGGAACTGTGCAG
Seq A exon
GTGGATGGCCTGATAAAGACTCTCCCTGTTCAACTTCAGCTAGGCGCAGTCAAGGTATACCAATCTGGCGTTGCTGTCGCTTTGGAAACAGACTTTGGTCTCTTGGTGACCTATGACGGATTGCACTACGCCTCCATCTCCCTCCCCAGCTCTTATTTCAACAACACTTGCGGCCTATGTGGTAACTACAACGATGACCCTGCCGATGACCCTGTGTTGCCAGATGGCTCTCTGGCAGAGAGCGTAGTGGAACTGGGTGGTAGCTGGCGAGCTGAAGACACAGATTTTCGTTGTACAGACGGCTGTGCCCAGAACTGTAGCATGTGTGAACCGGCAGCTGAAGCATTTTACTTTCGATCAGACTACTGTGGGCTCATCAATAAGACTGATGGGCCATTCAGAGACTGCAGGGCTGTGGTAGACCCAACAGCATTTGTTTACAGCTGCGTTTATGATATGTGCAGCAATCGTGATAACATCACCACCCTGTGCCAAGCTATACAGGCATATGCCCTTGCATGCCAAGCCCTGGGAGTAACCATACGACCCTGGAGATCACGCTCGTTCTGTG
Seq C2 exon
CACTGACATGCCCTGAGAACAGCCACTATCAAGTCTGCACAAGTGCATGTCCTGCCTCCTGCTCCGACTTAACATCTCATCTCTACTGTGCTCATCCATGTACCGAGGGCTGCCAGTGTGACCAGGGTTATGTGCTGAGTGGCAGCCGCTGTGTCCGTCGTTTTGAGTGCGGGTGTGAACGTGACGGCCTGTATTACGCCCTGAACGAGACTTTCTGGGCAGGGGAAGGGGGTGAGGTGGGTGAAGACTGCTCCCAGCGTTGTGTGTGTGGCCCGGCGGGTGAAGTAAAATGCTTCAATGACTCTTGTGGCGAAGGCGAGGTATGTGCAGCAGAAGTCGGGTTGCTCGGGTGTTACCCTCGTCGCGAAGCAATATGTTCGCTATCCCAGTCACAAATACTGGCCACATTTGATGGGTCCACGATGCCATTCCCTGATGAAAGCTCATTCTACTTGGTCAAAACTTTGGGACGTTTGCCTGCAAATGTAACATCAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059558-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(37.6=100)
A:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.3),PF127142=TILa=WD(100=30.2),PF0009420=VWD=PU(50.0=38.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGGGAAATGCCTGGTTT
R:
AATACAGGCCGTCACGTTCAC
Band lengths:
346-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]