MmuEX6065180 @ mm9
Exon Skipping
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42183075-42192490:-
Coord C1 exon
chr9:42192078-42192490
Coord A exon
chr9:42185577-42186147
Coord C2 exon
chr9:42183075-42183667
Length
571 bp
Sequences
Splice sites
3' ss Seq
TTTACTGTTACTGTTGGCAGGTT
3' ss Score
6.56
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GACAGTTCCTTCGTCGAGGGGAGGTGTTTTGGGATGACCTGAACTGTACCATCAAGTGTCGCTGTCTGGATTTCAACAATGAGATCTACTGTCAGGAGGCCTCCTGTAGCCCCTACGAGGTGTGCGAACCCAAGGGTCGGTTCTTCTACTGCAGCCCAGTGGAGACCAGTACCTGTGTGGTATTCGGGGAGCCACACTACCACACCTTTGATGGCTTCCTCTTCCACTTCCAAGGCTCGTGTGCTTACCTGTTGGCCCGACAGTGTCTACAAACCTCCAGCCTCCCCTTCTTCAGTGTGGAGGCCAAGAACGAGCACCGAGGGGGCTCTGCTGTCTCGTGGGTAAAGGAGCTCTCTGTCGAGGTCAATGGCTACAAGATTCTCATTCCTAAAGGAAGCTATGGGAAAGTCAAG
Seq A exon
GTTAATGACCTAGTGACTTCTTTGCCCGTCACCTTAGAGTTGGGGGCGGTGAAAATCTACCAGAGTGGCATGTCTACTGCCGTGGAAACAGATTTTGGGCTCTTAGTGACGTTTGACGGCCAGCACTACGCCTCCATTTCCATCCCAGGCTCTTACATAAACTCTACCTGTGGCCTATGCGGGAACTACAACAAAAATCCACTGGATGACTTCCTCCGCCCCGATGGCAGGCCCGCCATGTCGGTGCTGGACCTAGGAGAGAGCTGGCGTGTCTACCATGCTGACTGGAAGTGTGGCTCTGGCTGTGTAGACAATTGTACTCAGTGTGATGCAGCCACTGAGGCCCTCTACTTTGGTTCTGACTACTGCGGCTTCCTCAACAAGACGGATGGCCCCCTGTGGGAGTGCGGCACTGTTGTGGATGCCACGGCTTTTGTACACAGCTGTGTGTACGACCTGTGCAGTGTGAGGGACAACGGCACGCTCCTCTGCCAAGCCATTCAGGCCTACGCCTTGGTGTGCCAAGCCCTTGGCATCCCAATCGGAGACTGGAGAATCCAAACTGGGTGTG
Seq C2 exon
TGTCTACCGTGCGGTGCCCAAGCTTCAGCCATTACTCTGTATGTACCAGTAGCTGTCCGGACACCTGCTCGGACCTGACGGCCTCTCAGAACTGTGCCACTCCATGCACGGAAGGTTGCGAGTGCAACGAGGGCTTTGTCCTCAGCACCAGCCAGTGTGTCCCTTTGCACAAGTGCGGCTGTGACTTCGATGGCCACTACTATACCATGGGCGAGTTCTTCTGGGCCACCGCCAATTGTACAGTGCAGTGCTTATGCGAAGAGGGAGGGGATGTCTACTGCTTCAACAAGACCTGCCGGAGTGGGGAGGTGTGTGCTGTGGAGGACGGTTACCAGGGCTGCTTCCCCAAGCGGGAGACGGTGTGCCTGCTCAGCCAGAACCAGGTACTACACACATTTGATGGCGCCGCCTACGCATTCCCATCCGAGTTATCATATACCCTACTCAAGACCTGCCCTGAGCGTCCTGAGTACTTGGAAATTGACATCAACAAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(89.3=36.2),PF0009420=VWD=PU(50.3=57.2)
A:
PF0009420=VWD=PD(48.4=39.8),PF087426=C8=WD(100=39.8)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCTCGTGGGTAAAGGA
R:
CCTCTTCGCATAAGCACTGCA
Band lengths:
349-920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: