BtaEX6058773 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32716707-32719969:+
Coord C1 exon
chr15:32716707-32716841
Coord A exon
chr15:32717630-32717785
Coord C2 exon
chr15:32719820-32719969
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGGTGTTTTCCTCAGATT
3' ss Score
10.42
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AAAACCCCACGGAGGCCCCCACCTGCTCCCGCTACTTCCAGTTCCAGTGCGAGAACGGGCACTGCATCCCCAACAGGTGGAAATGTGACCGGGAGAACGACTGCGGGGACTGGTCTGACGAGAAGGACTGCGGAG
Seq A exon
ATTCACATATTCTTCCCTCCCCCACTCCCGGGCCCTCCACGTGTCTGCCCAATTACTACCGCTGCAGCAGTGGGGCCTGCGTGATGGACAGCTGGGTGTGCGACGGATATCGAGACTGTATAGACGGCTCGGACGAGGAGGCCTGCCCCTCGCCTG
Seq C2 exon
CCAATGTGACTGCTGCCTCCACGCCTACCCAGCTCGGGCGGTGCGACCGGTTTGAATTCGAGTGCCGTCAACCGAAGAAGTGTATCCCCAACTGGAGGCGCTGTGACGGCCACCAGGATTGCCAGGATGGCCAGGACGAGGCCAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'58-43,'58-41,59-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.020
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=82.6)
A:
PF0005713=Ldl_recept_a=WD(100=69.8)
C2:
PF0005713=Ldl_recept_a=WD(100=74.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTTCCAGTTCCAGTGCG
R:
CCTCGTCCTGGCCATCCTG
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]