DreEX0074510 @ danRer10
Exon Skipping
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21622539-21626426:-
Coord C1 exon
chr15:21626292-21626426
Coord A exon
chr15:21626042-21626194
Coord C2 exon
chr15:21622539-21622694
Length
153 bp
Sequences
Splice sites
3' ss Seq
GTATGTGTGTGTTTGTCCAGGTG
3' ss Score
8.83
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
CATCGCCGACTGAGGAGCCAGGCTGCACGAGTTACTTCCGGTTTGAGTGTAAAAACGGCCGCTGTGTGCCTGCCTGGTGGAAATGTGATGGAGAAAATGACTGCGGCGACTGGTCTGATGAGTCTCAGTGTTCAG
Seq A exon
GTGGCGAAGCTCTTCACACACCTGCACCGGGTCCTGCTACCTGTGCTCCTAATCGTTTCCGCTGTGGTTCTGGCGCATGTATTGTGGACACCTGGGTGTGTGACGGCTATGCGGACTGTCCTGATAGTAGTGATGAAGCAGGCTGTCCAACAG
Seq C2 exon
TGAAAGGCTCTGTGACTTCAGTGACGACTCTTCCTCCATCGGGCCGCTGTACTAAAGATCAGTTTCTGTGTGTGAAGCCTCCAGCATGTATTTCAGATTGGAAGCGCTGTGATGGTCATTCTCACTGCCTGGACGGATCTGACGAGGCCAACTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892-'33-39,'33-37,35-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=82.6)
A:
PF0005713=Ldl_recept_a=WD(100=71.2)
C2:
PF0005713=Ldl_recept_a=WD(100=71.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGCACGAGTTACTTCC
R:
CGTCCAGGCAGTGAGAATGAC
Band lengths:
252-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]