MmuEX0044406 @ mm9
Exon Skipping
Gene
ENSMUSG00000049313 | Sorl1
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:41804254-41809688:-
Coord C1 exon
chr9:41809554-41809688
Coord A exon
chr9:41808327-41808482
Coord C2 exon
chr9:41804254-41804403
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCTTGCTTGTTCTTCCTCAGATT
3' ss Score
10.65
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAAACCCCACGGAAGCCCCAAACTGTTCCCGTTACTTTCAGTTCCACTGTGAGAATGGCCACTGCATCCCCAACAGGTGGAAATGTGACAGAGAGAACGACTGTGGGGACTGGTCTGATGAGAAGGATTGTGGAG
Seq A exon
ATTCACATGTTCTACCCTCCCCGACCCCCGGGCCCTCCACGTGTCTGCCCAATTACTTCCACTGCAGCAGCGGGGCCTGTGTGATGGGCACCTGGGTGTGCGACGGCTACAGGGACTGTGCAGATGGCTCTGATGAGGAGGCCTGCCCCTCTCTAG
Seq C2 exon
CAAACTCCACTGCCGCCTCCACTCCCACCCAGTTCGGGCAGTGCGACCGATTTGAGTTCGAGTGTCACCAACCAAAGAAATGTATCCCCAACTGGAAGCGCTGTGACGGCCACCAAGATTGCCAAGACGGCCAGGATGAAGCCAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'35-33,'35-32,36-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=82.6)
A:
PF0005713=Ldl_recept_a=WD(100=69.8)
C2:
PF0005713=Ldl_recept_a=WD(100=74.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGTGAGAATGGCCACTG
R:
GGCAGTTGGCTTCATCCTGG
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: