BtaEX6058776 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32713379-32715741:+
Coord C1 exon
chr15:32713379-32713486
Coord A exon
chr15:32714643-32714774
Coord C2 exon
chr15:32715610-32715741
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCTGGTCCCTTTCAGAGC
3' ss Score
10.61
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AGAAGAAGTGCAACGGGTTCCGCTGCCCGAATGGCACCTGCATCCCATCCAGCAAACACTGCGACGGTCTGCACGACTGCTCCGACGGCTCGGACGAACAGCACTGCG
Seq A exon
AGCCCCTGTGTACTCGCTTCATGGACTTCGTGTGTAAGAACCGCCAGCAGTGCCTCTTCCAGTCCATGGTGTGTGACGGCATCATCCAGTGCCGGGACGGCTCTGACGAGGATCCGGAGTTCGCAGGATGCT
Seq C2 exon
CCCGAGACCCCGAGTTCCACAAGGTGTGTGACGAGTTCAGCTTCCAGTGTCAGAACGGAGTGTGCATCAGTTTGATCTGGAAATGTGATGGGATGGATGACTGCGGCGATGACTCCGACGAAGCCAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'55-39,'55-38,56-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(7.0=8.1),PF0005713=Ldl_recept_a=PD(89.7=94.6)
A:
PF0005713=Ldl_recept_a=WD(100=93.3)
C2:
PF0005713=Ldl_recept_a=WD(100=82.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGTGCAACGGGTTCC
R:
GTTGGCTTCGTCGGAGTCATC
Band lengths:
236-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]