DreEX0074509 @ danRer10
Exon Skipping
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21626603-21629580:-
Coord C1 exon
chr15:21629470-21629580
Coord A exon
chr15:21629250-21629381
Coord C2 exon
chr15:21626603-21626734
Length
132 bp
Sequences
Splice sites
3' ss Seq
TAACAGAGTGTGTTCTACAGGTC
3' ss Score
4.65
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GAAGGCAAAAGTGCAATGGCTTCTTATGCTCGAATGGCACCTGTCTGCCTGCAAGTGCTCACTGCAATGGTGTTGAGGACTGTCCAGGTGGCGCTGATGAGCAAAACTGTG
Seq A exon
GTCCACTCTGTGCACACTATATGGAGTTTGTGTGCAGAAATCGAGCGCAGTGTCTGTTTCAGTCTCTGGTTTGTGACGGGACCCGGCACTGTGCTGATGGTTCTGATGAGGACCCCATTTATGCTGGATGCT
Seq C2 exon
CCACTAGTGTTGAGTTTGAGAAAACATGTGACGGCTACAACTTCCAGTGCACCAATGGGATGTGTGTGACGTTGGAGTGGAAGTGTGACGGCATGGACGACTGTGGTGACTACTCGGACGAGGCCAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892-'30-35,'30-34,31-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(9.1=10.5),PF0005713=Ldl_recept_a=PD(90.0=94.7)
A:
PF0005713=Ldl_recept_a=WD(100=95.6)
C2:
PF0005713=Ldl_recept_a=WD(100=82.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGCAATGGCTTCTTATGCT
R:
CAGTTGGCCTCGTCCGAGTAG
Band lengths:
234-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]