GgaEX0009391 @ galGal3
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
NA
Coordinates
chr24:3541494-3542397:-
Coord C1 exon
chr24:3542290-3542397
Coord A exon
chr24:3541850-3541984
Coord C2 exon
chr24:3541494-3541625
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTCAACTTTCCCCAGAAA
3' ss Score
7.63
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
AAAAGAAGTGCAATGGCTTCCAGTGCCCCAATGGCACCTGCATCTCAACCAGCAAACACTGCAACGGCATCACCGACTGCGCCGACGCCTCAGATGAACAGGACTGTG
Seq A exon
AAATTCCCCTGTGCACCCGTTACATGGACTTCGTCTGCAAGAACCGGCAGCAGTGCTTGTCCCACTCCATGGTGTGTGATGGTGACATCCAGTGTGAGGATGGCTCCGATGAAGACGCCAACTACGCGGGATGCG
Seq C2 exon
CCCAGGAGCCCGAGTTCCACCGCACCTGTGACCAGTTCAGCTTCCAGTGCGCAAACGGGGTGTGCATCAGCCTGGTGTGGAAGTGTGATGGCATGGATGACTGCGGTGATTACTCAGATGAAGCCAGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598-'25-31,'25-30,26-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(7.0=8.1),PF0005713=Ldl_recept_a=PD(89.7=94.6)
A:
PF0005713=Ldl_recept_a=WD(100=91.3)
C2:
PF0005713=Ldl_recept_a=WD(100=82.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTGCAATGGCTTCCAGT
R:
CACAGCTGGCTTCATCTGAGT
Band lengths:
237-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]