BtaEX6058799 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32584734-32610523:+
Coord C1 exon
chr15:32584734-32584807
Coord A exon
chr15:32602261-32602377
Coord C2 exon
chr15:32610398-32610523
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTGGTTTGATCTCTTTCAGGTT
3' ss Score
9.41
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGGGCGGACGAGAAACGCTCCGGAGGAGACGGAGCGCTGCCCTGCAGCAGGAGCCCATCCAGGTGTACGGACAG
Seq A exon
GTTAGTCTCAATGATTCCCACAATCAGATGGTGGTCCACTGGGCCGGCGAGAAGAGCAATGTCATCGTGGCCTTGGCCCGGGACAGCCTGGCGCTGGCGAAGCCCAAGAGCAGTGAC
Seq C2 exon
GTGTACGTGTCCTACGATTACGGAAGGTCATTCAAGAGAATCTCAGAGAAGCTGAACTTCGGTGAGGGGAACAGCAGCGAAGCTGTGATTGCCCAGTTCTACCACAGCCCTGCGGACAACAAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'1-2,'1-0,11-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACGAGAAACGCTCCG
R:
GCTGTGGTAGAACTGGGCAAT
Band lengths:
178-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]