MmuEX0044402 @ mm10
Exon Skipping
Gene
ENSMUSG00000049313 | Sorl1
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:42099145-42124297:-
Coord C1 exon
chr9:42123829-42124297
Coord A exon
chr9:42106428-42106544
Coord C2 exon
chr9:42099145-42099270
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTGGTCTCTTTCAGGTC
3' ss Score
13.38
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGCGAGCGGGACCCGGCGGCGGCGGTGGCCGTGGCTGCGGTGGCGGGCGCAGCGGAGCGGCCCGGGCGGCTTGGAGCCCCGGGAGCGGCGCGCGCGGCCCCGGCCCTGGCCCCGCGCTGTCCCGGCGCGCGCTGCACATTCTCTCCTGGCGGCGGCGCCACCTGCGGGAGCGTTCGCCCGAACATGGCGACACGGAGCAGCAGGAGGGAGTCGAGACTCCCTTTCCTATTCGCCCTGGTCGCGCTGCTACCCCGCGGGGCTCTCGGCGGGGGCTGGACGCAGAGATTGCACGGTGGCCCGGCGCCCTTGCCCCAGGACCGGGGCTTCTTCGTGGTGCAGGGCGACCCGCGCGATCTCCGGCTAGGAACGCACGGGGATGCCCCGGGGGCGAGCCCGGCGGCCAGGAAGCCACTCAGGACCCGGCGGAGCGCTGCTCTGCAGCCCCAGCCTATCCAGGTGTATGGACAG
Seq A exon
GTCAGTCTGAATGACTCCCACAATCAGATGGTGGTGCACTGGGCCGGAGAGAAAAGCAACGTGATCGTGGCATTAGCCCGAGACAGCCTGGCGTTGGCAAGGCCCAAGAGCAGTGAT
Seq C2 exon
GTGTATGTGTCTTACGACTATGGAAAATCATTCAGTAAGATTTCAGAGAAGCTGAACTTTGGCGTGGGCAACAACAGCGAAGCTGTGATCTCCCAGTTCTACCACAGCCCTGCTGACAACAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'0-3,'0-1,9-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTCGTGGTGCAGGGC
R:
GGCTGTGGTAGAACTGGGAGA
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types