DreEX6076172 @ danRer10
Exon Skipping
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21714161-21733886:-
Coord C1 exon
chr15:21733522-21733886
Coord A exon
chr15:21723029-21723145
Coord C2 exon
chr15:21714161-21714289
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATCATATTTTGTATTCACAGGCC
3' ss Score
8.18
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
TCTGTATCCATGGTAATGAGCGTGCCTGTGGTTGACCGCTAGAGGCGCCCTGTCACACCTTATCGTCAACATACACAAACATGGCGTCAGGGCAGACACGCAAGATGCTGGCGCTCAGTCGCTGTGCCATATATCTATTATTATTACTAGTTCCCGCTGCGATCTCCTCCACACTTCGACTCCACCACGATCAGAGATTCGTACTACCACAGGACAGAGGTTTTTCCCTTGTGAGCGCACACCTGGAGCCTGCAGAAAGTCGCGTCGTGCGCCTGGAGAGAGAAGTCAGGGAGGCTTCAGCCGCGCATCAGCTTCGCGTTCGGCGGAATGCTGCTGGAGCGCCCGTGCCAAATGTTTATGGAATG
Seq A exon
GCCAACCTGAATGACTCTCACAATCAGATGGTCGTCCACTGGGCCGGGGAGAAGAGTGACGTCATAGTAGCGTTAGCGAGAGACAGCGTTGGTGCCACAGACCCCAAAACCAGCTCT
Seq C2 exon
GTTTATGTGTCTTATGACTATGGTGCCAACTTCACCCCGGTATCAGAGAAATTTCAGCTGCCCAGGGAGCAGGAGGACAAGAAACAGGTCATCTCGCAGTTTTACCACAGTCCTGCCGACAACAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGACTCCACCACGATCAGA
R:
CCCTGGGCAGCTGAAATTTCT
Band lengths:
258-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]