BtaEX6058900 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35461774-35471555:-
Coord C1 exon
chr15:35471381-35471555
Coord A exon
chr15:35463342-35463449
Coord C2 exon
chr15:35461774-35461912
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGCCCACTGTGTCCTTACAGCCT
3' ss Score
10.56
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CACCACCCTCTCCTCTTCCAGCTGCTGCCTGCCCAGCGGGCCAGGTCTTTGTGAACTGCAGCGACCTGCATGCCGACCCTGAGCTGAGCAGAGAGCGGACGTGTGAGCAGCAGCTGCTGAACCTGAGCGTGCCAGCCCGCGGGCCCTGCCTCTCAGGATGCGCCTGTCCTCAGGG
Seq A exon
CCTGCTCAGACATGGGGATGCCTGCTTTCTGCCAGAGGAGTGCCCATGCACTTGGAAAGGGAAGGAGTACTACCCTGGGGACCAGGTCATGTCTCCCTGCCATTCCTG
Seq C2 exon
CGTGTGCCAGCGCGGCTCGTTCCAGTGCACCCTCCACCCCTGTGCCTCCACCTGCACAGCCTATGGTGACCGGCATTACCGCACGTTTGATGGGCTCCCATTTGACTTCGTGGGGGCGTGCAAAGTGCACCTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(76.2=81.4)
A:
PF0182612=TIL=PD(22.2=37.8)
C2:
PF0009420=VWD=PU(19.0=59.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGTGAACTGCAGCGACC
R:
CCCCACGAAGTCAAATGGGAG
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]