HsaEX6001085 @ hg38
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr11:17578373-17593327:+
Coord C1 exon
chr11:17578373-17578526
Coord A exon
chr11:17586474-17586581
Coord C2 exon
chr11:17593193-17593327
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGCTTGCTGTGTCTCTACAGTCT
3' ss Score
9.09
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTGCTGCCTGCCCAGCAGGCCAGGTCTTCGTGAACTGCAGCGACCTGCACACGGACCTGGAGCTGAGCAGGGAGAGGACGTGTGAGCAGCAACTGCTGAACCTGAGCGTGTCAGCCCGTGGCCCCTGCCTCTCGGGCTGCGCCTGTCCCCAGGG
Seq A exon
TCTGCTCAGACACGGGGATGCATGTTTCCTGCCAGAGGAGTGCCCCTGCACTTGGAAGGGGAAGGAGTATTTCCCTGGGGACCAGGTGATGTCTCCTTGCCATACCTG
Seq C2 exon
AGCACATCAGATGTCAGCTTCTCTGTGATTGTAGAGAATGTGAACTGCTACAGCTCTGGCATGATCTGCAGGAAATTTATTTCCATCAACGTTGGGAACTCACTCATTGTCTTTGATGATGACTCCGGAAATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'26-34,'26-32,28-34
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(76.2=92.3)
A:
PF0182612=TIL=PD(22.2=37.8)
C2:
PF0009420=VWD=FE(36.4=100)
Main Skipping Isoform:
ENST00000399397fB21751
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCAGGTCTTCGTGAAC
R:
AGTGAGTTCCCAACGTTGATGG
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains