MmuEX7003831 @ mm10
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:46267243-46271377:+
Coord C1 exon
chr7:46267243-46267396
Coord A exon
chr7:46269258-46269365
Coord C2 exon
chr7:46271239-46271377
Length
108 bp
Sequences
Splice sites
3' ss Seq
GGCTTACTGTGTCCCTCCAGCCT
3' ss Score
8.03
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTGCTGCCTGTCCAGCAGGCCAGGTGTTCGTGAACTGCAGTGAGCTGCACCCAGACCCTGAGCTCAGCAGGGAGAGGACGTGTGAGCAGCAGCTGCTGAACCTGAGCGTGCCAGCACGTGGCCCCTGCCTGTCGGGCTGTGCCTGTCCCCAGGG
Seq A exon
CCTGCTCAGACATGGGGACGCATGCTTCCCACCAGAGGAATGTCCATGTACCTGGAAGGGGAAGGAATATTTCCCTGGGGACCAGGTAGTCTCTTCCTGCCACACCTG
Seq C2 exon
TGTGTGCCAGCGGGGCTCGTTCCAGTGCACCCTGCACCCCTGCGCCTCCACCTGTACCGCCTATGGGGACCGACACTATCGCACATTTGACGGGCTTCCGTATGACTTTGTAGGGGCGTGCAAAGTGCACCTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-'13-33,'13-22,24-33=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(76.2=92.3)
A:
PF0182612=TIL=PD(22.2=37.8)
C2:
PF0009420=VWD=PU(19.0=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTCGTGAACTGCAGTGA
R:
CGCCCCTACAAAGTCATACGG
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types