GgaEX1041522 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr5:13123216-13134405:+
Coord C1 exon
chr5:13123216-13123369
Coord A exon
chr5:13129358-13129465
Coord C2 exon
chr5:13134267-13134405
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTATATATATTTTTTAATAGTCT
3' ss Score
5.32
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
CACACAGTTGCCCAGTTGGGCAGATTTATATTAACTGCAGTAATTCAAAAGTTGATGCTGAGCTCAGCAGAGAGAGAACTTGCGAGAATCAACTGCTAAACCTCACTTTCTCAGCACACCTTCCTTGTGTTTCAGGTTGTGTCTGCCCTCCAGG
Seq A exon
TCTTGTTAAGCATGGGGATGTATGCTTGGAAACAGATGAATGTCCATGTTTGTGGAAAGGAAAGGAGTACTTCCCAGGTGACAAAGTGATTTCATCCTGTCATACGTG
Seq C2 exon
CATTTGCCAGCATGGATCTTTTCAATGCACCTTCCATCCGTGCCCATCCATGTGTACTGCATATGGGGATCGGCATTACAGGACATTCGATGGACTTACATATGACTTTGTTGGAACTTGTAAGGCTTATCTAGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'19-22,'19-20,21-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(76.2=92.3)
A:
PF0182612=TIL=PD(22.2=37.8)
C2:
PF0009420=VWD=PU(19.0=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGTTGCCCAGTTGG
R:
TCGAATGTCCTGTAATGCCGA
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]